RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CXCL10P02778 98 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 FCGR2AP12318 317 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 MTCP1P56278 107 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 MBOAT2Q6ZWT7 520 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 SULF2Q8IWU5 870 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 TMEM102Q8N9M5 508 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-215ENST00000496447 PRRT1Q99946 306 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 TMEM100Q9NV29 134 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 A3GALT2U3KPV4 340 aa12.16□□□□□ -0.46
PTPRF-215ENST00000496447 C2CD4DB7Z1M9 353 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 GAAP10253 952 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 MFAP5Q13361 173 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 DNAJC22Q8N4W6 341 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 SIRT6Q8N6T7 355 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 FNDC9Q8TBE3 224 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 MFFQ9GZY8 342 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 LYRM4Q9HD34 91 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 TMEM9BQ9NQ34 198 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 CORINQ9Y5Q5 1042 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 POM121BA6NF01 834 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 UBFD1O14562 309 aaKnown RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 OR8G3PP0DMU2 310 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 GCAP28676 217 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 GIPRP48546 466 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF674Q2M3X9 581 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 LEXMQ3ZCV2 418 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 RPL22L1Q6P5R6 122 aaKnown RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF687Q8N1G0 1237 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 HSD17B8Q92506 261 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 DCUN1D4Q92564 292 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 ZC3HAV1LQ96H79 300 aaKnown RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 ALG12Q9BV10 488 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 ARRDC1-AS1Q9H2J1 176 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 ZNF281Q9Y2X9 895 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 A0A1B0GWA3 101 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 SULT1C4O75897 302 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 OR7C1O76099 320 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 GLULP15104 373 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 IKZF1Q13422 519 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 DPY19L2P1Q6NXN4 242 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 GOT1L1Q8NHS2 421 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 CMSS1Q9BQ75 279 aaKnown RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 NRSN2Q9GZP1 204 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 RRAS2P62070 204 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 IL10RAQ13651 578 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 NPSR1Q6W5P4 371 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 MSI2Q96DH6 328 aaKnown RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 MYOTQ9UBF9 498 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 ZMAT5Q9UDW3 170 aaKnown RBP12.15□□□□□ -0.46
PTPRF-215ENST00000496447 TRAPPC2LQ9UL33 140 aa12.15□□□□□ -0.46
PTPRF-215ENST00000496447 PKD1L3Q7Z443 1732 aa12.15□□□□□ -0.47
PTPRF-215ENST00000496447 RAB19A4D1S5 217 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 TARM1B6A8C7 271 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ZDHHC11BP0C7U3 371 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ELAVL1Q15717 326 aaKnown RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 SPRED1Q7Z699 444 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ZNF808Q8N4W9 903 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 BORCS7Q96B45 105 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ZNF286AQ9HBT8 521 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 DDX60Q8IY21 1712 aaKnown RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 TAPBPO15533 448 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 GABARAPO95166 117 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 B3GALT4O96024 378 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 OR8B8Q15620 311 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 TSSK4Q6SA08 328 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 METAP1DQ6UB28 335 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 COMTD1Q86VU5 262 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 SPEM1Q8N4L4 309 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 CELF2-AS1Q8N7Q2 184 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 OR4N2Q8NGD1 307 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 BCL7CQ8WUZ0 217 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ADAMTS14Q8WXS8 1223 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 MRGPRX1Q96LB2 322 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 PSD2Q9BQI7 771 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 MED20Q9H944 212 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 CEBPZOSA8MTT3 80 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 GASTP01350 101 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 TK1P04183 234 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 SSTR2P30874 369 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 PRKAR1BP31321 381 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 MFSD12Q6NUT3 480 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 OR6F1Q8NGZ6 308 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ZFAND1Q8TCF1 268 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 NEURL3Q96EH8 262 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 EDEM2Q9BV94 578 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 YARS2Q9Y2Z4 477 aaKnown RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 TMEM72A0PK05 275 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 RASD1Q9Y272 281 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 PPP3CBP16298 524 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 TRHRP34981 398 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 RPL23AP62750 156 aaKnown RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 LTBQ06643 244 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 DPTQ07507 201 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ZNF169Q14929 603 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 LHX8Q68G74 356 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 CMIPQ8IY22 773 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 ZNF454Q8N9F8 522 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 BRIX1Q8TDN6 353 aaKnown RBP12.14□□□□□ -0.47
PTPRF-215ENST00000496447 SDSLQ96GA7 329 aa12.14□□□□□ -0.47
PTPRF-215ENST00000496447 FCRL1Q96LA6 429 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms