RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 PAK4O96013 591 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ADH4P08319 380 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 OR10J4P0C629 311 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 METTL15P1P0C7V9 234 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 PPIAL4GP0DN37 164 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 HAPLN1P10915 354 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 PAX1P15863 534 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 KITLGP21583 273 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ATP5A1P25705 553 aaKnown RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 CD1CP29017 333 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SDC4P31431 198 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 UQCRC1P31930 480 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 NBL1P41271 181 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 PSMD8P48556 350 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 NOVA1P51513 510 aaKnown RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 RABGGTBP53611 331 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 TMEM50BP56557 158 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 MRPS34P82930 218 aaKnown RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 CFHR1Q03591 330 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 RIPPLY1Q0D2K3 151 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 CEACAM7Q14002 265 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 MAD2L1BPQ15013 274 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SPA17Q15506 151 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 GABRA6Q16445 453 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ZNF74Q16587 644 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SLC9C1Q4G0N8 1177 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ZNF385BQ569K4 471 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ARL13AQ5H913 290 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 C1orf220Q5T0J3 134 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 OGFRL1Q5TC84 451 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 GRHL2Q6ISB3 625 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 PRR27Q6MZM9 219 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 TFAP2EQ6VUC0 442 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 LINC00336Q6ZUF6 198 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SSX7Q7RTT5 188 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 OLIG3Q7RTU3 272 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ASCL5Q7RTU5 278 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SLC16A13Q7RTY0 426 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 MDGA2Q7Z553 956 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SPRED2Q7Z698 418 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 GPBP1Q86WP2 473 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 LDLRAD3Q86YD5 345 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 C4orf32Q8N8J7 132 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ST6GALNAC3Q8NDV1 305 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 OR52I1Q8NGK6 324 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 OR1K1Q8NGR3 316 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 FEZF2Q8TBJ5 459 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 MAPK15Q8TD08 544 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SFT2D1Q8WV19 159 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 DNAJC9Q8WXX5 260 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 MED8Q96G25 268 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 Q96M66 194 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 ZNF582Q96NG8 517 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 EPYCQ99645 322 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 RAB34Q9BZG1 259 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 SPRTNQ9H040 489 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 COMMD4Q9H0A8 199 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 RHOJQ9H4E5 214 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 HMG20AQ9NP66 347 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 IL23AQ9NPF7 189 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 PAK1IP1Q9NWT1 392 aaPredicted RBP3.8□□□□□ -1.8
BRCA1-220ENST00000492859 CDC42EP3Q9UKI2 254 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 NEU3Q9UQ49 428 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 FAM96BQ9Y3D0 163 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 TIMM10BQ9Y5J6 103 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 CEPT1Q9Y6K0 416 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 BCL9O00512 1426 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 CLIP1P30622 1438 aa3.8□□□□□ -1.8
BRCA1-220ENST00000492859 PSME4Q14997 1843 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 SYNMO15061 1565 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 ADGRA3Q8IWK6 1321 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 CNTNAP4Q9C0A0 1308 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 AQRO60306 1485 aaKnown RBP eCLIP3.79□□□□□ -1.8
BRCA1-220ENST00000492859 SNAPC4Q5SXM2 1469 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 PNPLA6Q8IY17 1366 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 DICER1Q9UPY3 1922 aaKnown RBP3.79□□□□□ -1.8
BRCA1-220ENST00000492859 LOC100289279A0A1B0GTE1 492 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 OR6C6A6NF89 314 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 LEUTXA8MZ59 168 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 ANKRD63C9JTQ0 380 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 ANHXE9PGG2 379 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 DCTN6O00399 190 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 EPHB6O15197 1021 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 SLC16A5O15375 505 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 SIGLEC5O15389 551 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 CYB5BO43169 146 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 RAD51CO43502 376 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 HPGDSO60760 199 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 HSBP1O75506 76 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 KRT33AO76009 404 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 S1PR2O95136 353 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 NDUFA7O95182 113 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 CLDN9O95484 217 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 IGSF6O95976 241 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 CCNE2O96020 404 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 C1QCP02747 245 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 CD74P04233 296 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 ISG15P05161 165 aa3.79□□□□□ -1.8
BRCA1-220ENST00000492859 RPLP0P05388 317 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms