RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C7orf50Q9BRJ6 194 aaKnown RBP16.35■□□□□ 0.21
VIM-206ENST00000487938 OR10A4Q9H209 315 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 TRIOO75962 3097 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 SRPX2O60687 465 aaPredicted RBP16.35■□□□□ 0.21
VIM-206ENST00000487938 SSTR2P30874 369 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 P2RX3P56373 397 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 HSF2Q03933 536 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 CAMK2BQ13554 666 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 CAMK2DQ13557 499 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 ZBTB37Q5TC79 503 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 LIPNQ5VXI9 398 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 DNAAF1Q8NEP3 725 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 MAP6Q96JE9 813 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 MRPL39Q9NYK5 338 aaKnown RBP16.35■□□□□ 0.21
VIM-206ENST00000487938 FRRS1LQ9P0K9 344 aa16.35■□□□□ 0.21
VIM-206ENST00000487938 MRM2Q9UI43 246 aaKnown RBP16.35■□□□□ 0.21
VIM-206ENST00000487938 CACNA1IQ9P0X4 2223 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 GPANK1O95872 356 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 CD14P08571 375 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 SULT1A3P0DMM9 295 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 SULT1A4P0DMN0 295 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 EGR4Q05215 589 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 C19orf57Q0VDD7 668 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.34■□□□□ 0.21
VIM-206ENST00000487938 ODF4Q2M2E3 257 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 OTPQ5XKR4 325 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 KIAA0895LQ68EN5 471 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 TEX261Q6UWH6 196 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 ZNF782Q6ZMW2 699 aaPredicted RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 FAM122BQ7Z309 247 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 ATG4DQ86TL0 474 aaPredicted RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 PIAS4Q8N2W9 510 aaPredicted RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 OR11G2Q8NGC1 345 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 PHYHIPQ92561 330 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 LRRC61Q9BV99 259 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 PNO1Q9NRX1 252 aaKnown RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 OR5V1Q9UGF6 321 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 U3KQ87 197 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 MEIKINA0A087WXM9 373 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 C17orf105B2RV13 164 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 KHDRBS3O75525 346 aaKnown RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 UPK3AO75631 287 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 TOXO94900 526 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 NSA2O95478 260 aaKnown RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 ZP1P60852 638 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 IL10RAQ13651 578 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 GRM7Q14831 915 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 ISXQ2M1V0 245 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 LGALSLQ3ZCW2 172 aaPredicted RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 FAAP20Q6NZ36 180 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 STAC2Q6ZMT1 411 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 SLC16A9Q7RTY1 509 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 OR8H3Q8N146 312 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 LRRC75AQ8NAA5 344 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 RPS4Y2Q8TD47 263 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 KTI12Q96EK9 354 aaPredicted RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 GPX7Q96SL4 187 aaPredicted RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 ELF4Q99607 663 aaPredicted RBP16.34■□□□□ 0.21
VIM-206ENST00000487938 SLC19A3Q9BZV2 496 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 TCF7L1Q9HCS4 588 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 DLL4Q9NR61 685 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 MMP17Q9ULZ9 603 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 HIF3AQ9Y2N7 669 aa16.34■□□□□ 0.21
VIM-206ENST00000487938 ALPK2Q86TB3 2170 aa16.33■□□□□ 0.21
VIM-206ENST00000487938 MYO15AQ9UKN7 3530 aa16.33■□□□□ 0.21
VIM-206ENST00000487938 A0A1W2PQ72 361 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 ITGA10O75578 1167 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 UBL4AP11441 157 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 MST1P26927 711 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 PTH2RP49190 550 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 VEGFCP49767 419 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 SELENOPP49908 381 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 SKP1P63208 163 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 CLPPQ16740 277 aaPredicted RBP16.33■□□□□ 0.2
VIM-206ENST00000487938 PWWP2BQ6NUJ5 590 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 POMZP3Q6PJE2 187 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 Q6ZTK2 550 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 PRR22Q8IZ63 422 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 EXD3Q8N9H8 876 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 OR5AK2Q8NH90 309 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 C1orf216Q8TAB5 229 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 S100A16Q96FQ6 103 aaKnown RBP16.33■□□□□ 0.2
VIM-206ENST00000487938 CMTM3Q96MX0 182 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 LPAR4Q99677 370 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 ACTR6Q9GZN1 396 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 CDCP1Q9H5V8 836 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 MMP25Q9NPA2 562 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 KLHL9Q9P2J3 617 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 FOXJ3Q9UPW0 622 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 SPEGQ15772 3267 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 GABARAPH6UMI1 98 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 PEX14O75381 377 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 TACSTD2P09758 323 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 ADRA2CP18825 462 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 DNASE1P24855 282 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 RAG2P55895 527 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 SKP2Q13309 424 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 ALKBH1Q13686 389 aaKnown RBP16.33■□□□□ 0.2
VIM-206ENST00000487938 KANSL1Q7Z3B3 1105 aa16.33■□□□□ 0.2
VIM-206ENST00000487938 FAM220AQ7Z4H9 259 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms