RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CRMP1Q14194 572 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 GXYLT1Q4G148 440 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF362Q5T0B9 420 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 XAF1Q6GPH4 301 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 TMPPEQ6ZT21 453 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SATL1Q86VE3 508 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 IGFN1Q86VF2 1251 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SULF2Q8IWU5 870 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ARIH2OSQ8N7S6 290 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SLC37A3Q8NCC5 494 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 LSM14AQ8ND56 463 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 FAM83FQ8NEG4 500 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 TM9SF4Q92544 642 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SGCDQ92629 289 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 MUL1Q969V5 352 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 MIB2Q96AX9 1013 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 OTULINQ96BN8 352 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 RNFT2Q96EX2 444 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 SCMH1Q96GD3 660 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ACOT13Q9NPJ3 140 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 KLHL1Q9NR64 748 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 HAO2Q9NYQ3 351 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 WASF3Q9UPY6 502 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ERGIC3Q9Y282 383 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 EXOGQ9Y2C4 368 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 RPH3AQ9Y2J0 694 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 EXOSC1Q9Y3B2 195 aaKnown RBP11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ADAM18Q9Y3Q7 739 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 KCNMB2Q9Y691 235 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 AKAP13Q12802 2813 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ASPMQ8IZT6 3477 aa11.54□□□□□ -0.56
VPS13D-205ENST00000473099 ZFHX4Q86UP3 3567 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 LOC102725191A0A1B0GVB3 256 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 A6NIZ1 184 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF99A8MXY4 864 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-205ENST00000473099 SHISA8B8ZZ34 492 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 ACOT7O00154 380 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 XKRYO14609 159 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 EFSO43281 561 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 AHCYL1O43865 530 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 VAMP5O95183 116 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 WISP1O95388 367 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 F13BP05160 661 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 HPNP05981 417 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 MYL12AP19105 171 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 SFTPDP35247 375 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 CENPAP49450 140 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 OR2B6P58173 313 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 RAP1BP61224 184 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 RAP1AP62834 184 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 PLGLB1Q02325 96 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 PIGFQ07326 219 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 IRF3Q14653 427 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 RAB39AQ14964 217 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 DEFB109BQ30KR1 87 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 TMEM176BQ3YBM2 270 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF766Q5HY98 468 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 SYT6Q5T7P8 510 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-205ENST00000473099 UBE2UQ5VVX9 321 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 PAQR6Q6TCH4 344 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 UNQ6494/PRO21346Q6UXR6 183 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 PXKQ7Z7A4 578 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 NPEPL1Q8NDH3 523 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 SDR9C7Q8NEX9 313 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 FDCSPQ8NFU4 85 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 OR52I1Q8NGK6 324 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 OR4K13Q8NH42 304 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 FAR1Q8WVX9 515 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 LGALS12Q96DT0 336 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 ZHX1-C8orf76Q96EF9 292 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 Q96M85 177 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 KLHL15Q96M94 604 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 SFXN2Q96NB2 322 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 MYCBPQ99417 103 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-205ENST00000473099 RHNO1Q9BSD3 238 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 NAA11Q9BSU3 229 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-205ENST00000473099 JAM3Q9BX67 310 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 ZNF703Q9H7S9 590 aaPredicted RBP11.53□□□□□ -0.56
VPS13D-205ENST00000473099 INPP5EQ9NRR6 644 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 PLA2G3Q9NZ20 509 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 MOKQ9UQ07 419 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 SSUH2Q9Y2M2 353 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 PCDHGB7Q9Y5F8 929 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 NOX1Q9Y5S8 564 aa11.53□□□□□ -0.56
VPS13D-205ENST00000473099 TEX13CA0A0J9YWL9 993 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 FAM183AA6NL82 134 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 NPIPA5E9PKD4 350 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 C11orf98E9PRG8 122 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 ZNF701M0R085 212 aaPredicted RBP11.52□□□□□ -0.57
VPS13D-205ENST00000473099 ZZEF1O43149 2961 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 TLX3O43711 291 aaPredicted RBP11.52□□□□□ -0.57
VPS13D-205ENST00000473099 TRAPPC6AO75865 159 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 SEC14L2O76054 403 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 F10P00742 488 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 IL11P20809 199 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 SLC2A5P22732 501 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 TCEA1P23193 301 aaKnown RBP11.52□□□□□ -0.57
VPS13D-205ENST00000473099 AHCYP23526 432 aa11.52□□□□□ -0.57
VPS13D-205ENST00000473099 C21orf33P30042 268 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms