RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SPATA24Q86W54 205 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 MEX3DQ86XN8 651 aaKnown RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 CNEP1R1Q8N9A8 125 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 ZNF610Q8N9Z0 462 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 LRRC75AQ8NAA5 344 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 OR4K5Q8NGD3 323 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 OR2T29Q8NH02 315 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 OR5J2Q8NH18 312 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 OR52J3Q8NH60 311 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 CA5BP1Q8WTZ4 195 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 TMEM45BQ96B21 275 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 BPIFA2Q96DR5 249 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 OXGR1Q96P68 337 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 ZNF385AQ96PM9 386 aaKnown RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 TACO1Q9BSH4 297 aaKnown RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 KLHL4Q9C0H6 718 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 OPN3Q9H1Y3 402 aaPredicted RBP11.01□□□□□ -0.65
USP40-205ENST00000430158 NANSQ9NR45 359 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 EMC9Q9Y3B6 208 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 DCHS2Q6V1P9 2916 aa11.01□□□□□ -0.65
USP40-205ENST00000430158 ITPR2Q14571 2701 aa11□□□□□ -0.65
USP40-205ENST00000430158 CELSR2Q9HCU4 2923 aa11□□□□□ -0.65
USP40-205ENST00000430158 GPR171O14626 319 aa11□□□□□ -0.65
USP40-205ENST00000430158 KRT36O76013 467 aa11□□□□□ -0.65
USP40-205ENST00000430158 GADD45GO95257 159 aa11□□□□□ -0.65
USP40-205ENST00000430158 IFI30P13284 250 aa11□□□□□ -0.65
USP40-205ENST00000430158 HOXB6P17509 224 aaKnown RBP11□□□□□ -0.65
USP40-205ENST00000430158 OR3A2P47893 321 aa11□□□□□ -0.65
USP40-205ENST00000430158 SMIM11AP58511 58 aa11□□□□□ -0.65
USP40-205ENST00000430158 ACTR3P61158 418 aa11□□□□□ -0.65
USP40-205ENST00000430158 SPIBQ01892 262 aa11□□□□□ -0.65
USP40-205ENST00000430158 EXOC3L2Q2M3D2 409 aa11□□□□□ -0.65
USP40-205ENST00000430158 C1orf146Q5VVC0 180 aa11□□□□□ -0.65
USP40-205ENST00000430158 TMEM225Q6GV28 225 aa11□□□□□ -0.65
USP40-205ENST00000430158 TREML4Q6UXN2 200 aa11□□□□□ -0.65
USP40-205ENST00000430158 ZNF730Q6ZMV8 503 aa11□□□□□ -0.65
USP40-205ENST00000430158 ZER1Q7Z7L7 766 aa11□□□□□ -0.65
USP40-205ENST00000430158 GALNT5Q7Z7M9 940 aa11□□□□□ -0.65
USP40-205ENST00000430158 TMEM179BQ7Z7N9 219 aa11□□□□□ -0.65
USP40-205ENST00000430158 MCEMP1Q8IX19 187 aa11□□□□□ -0.65
USP40-205ENST00000430158 ALPK1Q96QP1 1244 aa11□□□□□ -0.65
USP40-205ENST00000430158 ASPNQ9BXN1 380 aa11□□□□□ -0.65
USP40-205ENST00000430158 NTN4Q9HB63 628 aa11□□□□□ -0.65
USP40-205ENST00000430158 KCNJ16Q9NPI9 418 aa11□□□□□ -0.65
USP40-205ENST00000430158 ARMC1Q9NVT9 282 aa11□□□□□ -0.65
USP40-205ENST00000430158 AURKCQ9UQB9 309 aa11□□□□□ -0.65
USP40-205ENST00000430158 CACNA1DQ01668 2161 aa11□□□□□ -0.65
USP40-205ENST00000430158 PLCE1Q9P212 2302 aa11□□□□□ -0.65
USP40-205ENST00000430158 PDLIM1O00151 329 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 STAMBPO95630 424 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 PLGP00747 810 aaPredicted RBP10.99□□□□□ -0.65
USP40-205ENST00000430158 NQO1P15559 274 aaKnown RBP10.99□□□□□ -0.65
USP40-205ENST00000430158 GSSP48637 474 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 ASCL1P50553 236 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 FXYD6P3P58550 94 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 RPL18Q07020 188 aaKnown RBP10.99□□□□□ -0.65
USP40-205ENST00000430158 PUDPQ08623 228 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 PPP1R8Q12972 351 aaKnown RBP10.99□□□□□ -0.65
USP40-205ENST00000430158 PMS2P3Q13401 168 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 TMEM201Q5SNT2 666 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 PXKQ7Z7A4 578 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 GABRG1Q8N1C3 465 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 C10orf53Q8N6V4 93 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 MOSPD2Q8NHP6 518 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 TXNDC15Q96J42 360 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 ENKD1Q9H0I2 346 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 DENND2DQ9H6A0 471 aaPredicted RBP10.99□□□□□ -0.65
USP40-205ENST00000430158 EMC3Q9P0I2 261 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 PROCRQ9UNN8 238 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 HIF3AQ9Y2N7 669 aa10.99□□□□□ -0.65
USP40-205ENST00000430158 SETXQ7Z333 2677 aaKnown RBP10.98□□□□□ -0.65
USP40-205ENST00000430158 TNFRSF11BO00300 401 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 AQP2P41181 271 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 GPR4P46093 362 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 IST1P53990 364 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 KPNB1Q14974 876 aaKnown RBP10.98□□□□□ -0.65
USP40-205ENST00000430158 ZSCAN26Q16670 478 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 FGD3Q5JSP0 725 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 C1orf94Q6P1W5 598 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 PGBD2Q6P3X8 592 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.98□□□□□ -0.65
USP40-205ENST00000430158 GPAT4Q86UL3 456 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 TMEM123Q8N131 208 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 OR13C2Q8NGS9 318 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 RNASE6Q93091 150 aaKnown RBP10.98□□□□□ -0.65
USP40-205ENST00000430158 FAM46AQ96IP4 442 aaKnown RBP10.98□□□□□ -0.65
USP40-205ENST00000430158 TNFRSF13CQ96RJ3 184 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 C12orf49Q9H741 205 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 MCCC2Q9HCC0 563 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 GALNT8Q9NY28 637 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 PRSS50Q9UI38 385 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 RCE1Q9Y256 329 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 SIGLEC7Q9Y286 467 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 NOSIPQ9Y314 301 aaKnown RBP10.98□□□□□ -0.65
USP40-205ENST00000430158 NOX1Q9Y5S8 564 aa10.98□□□□□ -0.65
USP40-205ENST00000430158 NOTCH2Q04721 2471 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 A1L4Q6 167 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 EFCAB9A8MZ26 197 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 EEF1E1-BLOC1S5C9J1V9 151 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 H3BNX3 289 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms