RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 XKRYO14609 159 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 PNPP00491 289 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 SEMG1P04279 462 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ANXA7P20073 488 aaKnown RBP11.02□□□□□ -0.65
HMGB1-206ENST00000405805 PTAFRP25105 342 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 HLA-DMAP28067 261 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 IRF4Q15306 451 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 CLLU1Q5K131 121 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 NKAPLQ5M9Q1 402 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 C17orf47Q8NEP4 570 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 FGF13Q92913 245 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF251Q9BRH9 671 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ULBP3Q9BZM4 244 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 OR52A5Q9H2C5 316 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 SLC38A1Q9H2H9 487 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 CRLF2Q9HC73 371 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 A0A087WZY1 265 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 H0Y8X5 98 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 NPC1O15118 1278 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ZP3P21754 424 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 HTR1FP30939 366 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 S100A11P31949 105 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 HOXA1P49639 335 aaPredicted RBP11.02□□□□□ -0.65
HMGB1-206ENST00000405805 TRAM1Q15629 374 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 TMEM35AQ53FP2 167 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF546Q86UE3 836 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 LILRB2Q8N423 598 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 OR4D9Q8NGE8 314 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 PATE1Q8WXA2 126 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 PEX11GQ96HA9 241 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 OR8D2Q9GZM6 311 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 NOX4Q9NPH5 578 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 NDRG3Q9UGV2 375 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 TRAPPC4Q9Y296 219 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 MYLKQ15746 1914 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 KNTC1P50748 2209 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 B4DGG1 531 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 MCIDASD6RGH6 385 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 TRIM77I1YAP6 450 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 RBBP9O75884 186 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 NAGAP17050 411 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 PDE7AQ13946 482 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF124Q15973 351 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 PCGF3Q3KNV8 242 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 DCST2Q5T1A1 773 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF620Q6ZNG0 422 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 NDUFAF7Q7L592 441 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 CAMKMTQ7Z624 323 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 LINC01555Q8NAE3 123 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 CCL4L1Q8NHW4 92 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 DVL3Q92997 716 aaPredicted RBP11.01□□□□□ -0.65
HMGB1-206ENST00000405805 CXorf58Q96LI9 332 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 OR2M2Q96R28 347 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 TRIM2Q9C040 744 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 KLK11Q9UBX7 282 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 GPR34Q9UPC5 381 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 RDH16O75452 317 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 LUMP51884 338 aaPredicted RBP11.01□□□□□ -0.65
HMGB1-206ENST00000405805 HSD17B7P56937 341 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 DUSP2Q05923 314 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 SRSF5Q13243 272 aaKnown RBP11.01□□□□□ -0.65
HMGB1-206ENST00000405805 FAM78AQ5JUQ0 283 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 UNQ6126/PRO20091Q6UXV3 157 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 SYNPRQ8TBG9 265 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 MS4A6EQ96DS6 147 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 RHOVQ96L33 236 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 MS4A4EQ96PG1 132 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 MAP3K3Q99759 626 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 NOX3Q9HBY0 568 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 LAMP5Q9UJQ1 280 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 URGCP-MRPS24S4R325 110 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 PRAMEF27A3QJZ7 478 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 IDSB3KWA1 339 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 MAN2B1O00754 1011 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 SLC34A2O95436 690 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 OLFM2O95897 454 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 DBIP07108 87 aaKnown RBP11.01□□□□□ -0.65
HMGB1-206ENST00000405805 PRKXP51817 358 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 ARHGAP11AQ6P4F7 1023 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 MBOAT2Q6ZWT7 520 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 PRR22Q8IZ63 422 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 TCTE3Q8IZS6 198 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 OR2L3Q8NG85 312 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 CNN2Q99439 309 aaKnown RBP11.01□□□□□ -0.65
HMGB1-206ENST00000405805 SLC17A9Q9BYT1 436 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 ENKD1Q9H0I2 346 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 NUBP2Q9Y5Y2 271 aa11.01□□□□□ -0.65
HMGB1-206ENST00000405805 TMEM72A0PK05 275 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 GREM1O60565 184 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 MAP3K8P41279 467 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 CLDN20P56880 219 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 SLC29A4Q7RTT9 530 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 SMARCD2Q92925 531 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 HAVCR1Q96D42 359 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 COMMD4Q9H0A8 199 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 ACKR4Q9NPB9 350 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 ZSWIM8A7E2V4 1837 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 DCDC2BA2VCK2 349 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 SURF4O15260 269 aa11□□□□□ -0.65
HMGB1-206ENST00000405805 SIGLEC6O43699 453 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms