RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 DNAJA3Q96EY1 480 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SORCS2Q96PQ0 1159 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 KCNK17Q96T54 332 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RNF2Q99496 336 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SEMA3CQ99985 751 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SAMD10Q9BYL1 202 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MTHFD2LQ9H903 347 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RDH14Q9HBH5 336 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NOX3Q9HBY0 568 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 KCMF1Q9P0J7 381 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ERVK-18Q9QC07 812 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZDHHC2Q9UIJ5 367 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CDC42EP3Q9UKI2 254 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 hCG_2014768A0A024R1R8 64 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 E7ESA3 106 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 DNPH1O43598 174 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF354AO60765 605 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 AKAIN1P0CW23 69 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 TGM1P22735 817 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MDH2P40926 338 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 KCNQ1P51787 676 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 WNT3AP56704 352 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PMS2P3Q13401 168 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NPY5RQ15761 445 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF74Q16587 644 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 HES3Q5TGS1 186 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SDHAF4Q5VUM1 108 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 LINGO2Q7L985 606 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 COMMD7Q86VX2 200 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SLC30A7Q8NEW0 376 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NPRL2Q8WTW4 380 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 APH1BQ8WW43 257 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 INTS12Q96CB8 462 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MVB12AQ96EY5 273 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SLC41A2Q96JW4 573 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR2A14Q96R47 310 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CNN2Q99439 309 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ALOXE3Q9BYJ1 711 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 LIN7BQ9HAP6 207 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NMUR1Q9HB89 426 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 IL37Q9NZH6 218 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 THYN1Q9P016 225 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 TESQ9UGI8 421 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 A4GNTQ9UNA3 340 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 LOXL2Q9Y4K0 774 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MEIS3P2A8K0S8 358 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GABARAPH6UMI1 98 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ARNTLO00327 626 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GABARAPO95166 117 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MYOGP15173 224 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MAGP20916 626 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GABRA5P31644 462 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 DYRK1AQ13627 763 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SMAD2Q15796 467 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 YIF1BQ5BJH7 314 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF571Q7Z3V5 609 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ABI3BPQ7Z7G0 1075 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 Q8IYB0 196 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR4K14Q8NGD5 310 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR51A4Q8NGJ6 313 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GNPDA2Q8TDQ7 276 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNRF4Q8WWF5 429 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 DIO2Q92813 273 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PHF21BQ96EK2 531 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SAT2Q96F10 170 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF764Q96H86 408 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PCED1BQ96HM7 432 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CXorf58Q96LI9 332 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR5B2Q96R09 309 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MGLLQ99685 303 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 HCAR1Q9BXC0 346 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PINK1Q9BXM7 581 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 NXF2Q9GZY0 626 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ADAP2Q9NPF8 381 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GNG8Q9UK08 70 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF490Q9ULM2 529 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SLC22A20A6NK97 555 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CCL21O00585 134 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 HTRA2O43464 458 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CLN5O75503 358 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 GJB3O75712 270 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 MT-ATP6P00846 226 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ITGA5P08648 1049 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 PIPP12273 146 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF37AP17032 561 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 AOAHP28039 575 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RPL29P47914 159 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RPL11P62913 178 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 CFHR1Q03591 330 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RPL7L1Q6DKI1 246 aaKnown RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 FAHD2BQ6P2I3 314 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 RNF130Q86XS8 419 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF433Q8N7K0 673 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR10H4Q8NGA5 316 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 OR13C2Q8NGS9 318 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 ACOT11Q8WXI4 607 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 TSACCQ96A04 125 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-202ENST00000339701 SGK3Q96BR1 496 aa3.06□□□□□ -1.92
CSMD3-202ENST00000339701 FAHD2AQ96GK7 314 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms