RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 HPRP00739 348 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ADAP00813 363 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 IGHG3P01860 377 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ASAH2BP0C7U1 165 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 BMP7P18075 431 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 DNASE1P24855 282 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 FKBP2P26885 142 aaKnown RBP8.45□□□□□ -1.06
TRIM28-208ENST00000597172 SFTPDP35247 375 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 POLR2IP36954 125 aaKnown RBP8.45□□□□□ -1.06
TRIM28-208ENST00000597172 IFNGR2P38484 337 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 VHLP40337 213 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 RPS5P46782 204 aaKnown RBP8.45□□□□□ -1.06
TRIM28-208ENST00000597172 CLK1P49759 484 aaKnown RBP8.45□□□□□ -1.06
TRIM28-208ENST00000597172 LHX2P50458 406 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 CASP6P55212 293 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 TPD52P55327 224 aaPredicted RBP8.45□□□□□ -1.06
TRIM28-208ENST00000597172 CLDN20P56880 219 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ALDH6A1Q02252 535 aaKnown RBP8.45□□□□□ -1.06
TRIM28-208ENST00000597172 TSPAN31Q12999 210 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 MYBPHQ13203 477 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 SELENBP1Q13228 472 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ZNF74Q16587 644 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 SYT14P1Q58G82 188 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 NHSL2Q5HYW2 709 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 GALNT5Q7Z7M9 940 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 GGNQ86UU5 652 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 KIF18BQ86Y91 864 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 PACRGLQ8N7B6 248 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ATG16L2Q8NAA4 619 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 OR6S1Q8NH40 331 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 NEIL3Q8TAT5 605 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 LIPHQ8WWY8 451 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 SDCCAG3Q96C92 435 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 DDIT4LQ96D03 193 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 SGTBQ96EQ0 304 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 DTNBP1Q96EV8 351 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ADGRG7Q96K78 797 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 SFXN2Q96NB2 322 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 TNFRSF13CQ96RJ3 184 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 UCK2Q9BZX2 261 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 TSPAN10Q9H1Z9 355 aaPredicted RBP8.45□□□□□ -1.06
TRIM28-208ENST00000597172 PLSCR2Q9NRY7 297 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 AP4B1Q9Y6B7 739 aa8.45□□□□□ -1.06
TRIM28-208ENST00000597172 ANK3Q12955 4377 aaKnown RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TRGV5A0A0B4J1U4 118 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 A0A1B0GVC2 190 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 HTR3EA5X5Y0 456 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 UNC119BA6NIH7 251 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 LIPT2A6NK58 231 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 EFCAB9A8MZ26 197 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 NPIPA5E9PKD4 350 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 LINC01387J3KSC0 135 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 HAX1O00165 279 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TFECO14948 347 aaPredicted RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 OR7A10O76100 309 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 SNAP29O95721 258 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 F12P00748 615 aaPredicted RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TSPAN19P0C672 248 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TFPIP10646 304 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 ZNF24P17028 368 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 IGFBP5P24593 272 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 FPR3P25089 353 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 EPHA2P29317 976 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 AQP4P55087 323 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 CLDN18P56856 261 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 FXYD6P3P58550 94 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 COX10Q12887 443 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 INAQ16352 499 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 BCL2A1Q16548 175 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 CTU2Q2VPK5 515 aaKnown RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 ZIK1Q3SY52 487 aaPredicted RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 FAM69AQ5T7M9 428 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 VASNQ6EMK4 673 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 C3orf33Q6P1S2 294 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 C5orf46Q6UWT4 87 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TMPPEQ6ZT21 453 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 CDK20Q8IZL9 346 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 OR13C2Q8NGS9 318 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 MFSD8Q8NHS3 518 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 SLC25A43Q8WUT9 341 aaPredicted RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 ABTB1Q969K4 478 aaPredicted RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 SLC25A36Q96CQ1 311 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 OR5B2Q96R09 309 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 MBOAT4Q96T53 435 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TIMP4Q99727 224 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 LIME1Q9H400 295 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 C8orf4Q9NR00 106 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 PAPOLBQ9NRJ5 636 aaKnown RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 KRT84Q9NSB2 600 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 SPRR3Q9UBC9 169 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 SEC14L4Q9UDX3 406 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 NPIPA1Q9UND3 350 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 SIGLEC7Q9Y286 467 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TRAPPC4Q9Y296 219 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TMEM5Q9Y2B1 443 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 POFUT2Q9Y2G5 429 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 HDGFL3Q9Y3E1 203 aa8.44□□□□□ -1.06
TRIM28-208ENST00000597172 SPIN1Q9Y657 262 aaPredicted RBP8.44□□□□□ -1.06
TRIM28-208ENST00000597172 TRAV27A0A087WT01 109 aa8.43□□□□□ -1.06
TRIM28-208ENST00000597172 INAFM1C9JVW0 142 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms