RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GPR137Q96N19 417 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 GAS2L1Q99501 681 aaPredicted RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 TIMM29Q9BSF4 260 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 HRASLSQ9HDD0 168 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 NIT2Q9NQR4 276 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 CDV3Q9UKY7 258 aaKnown RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 APODP05090 189 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 CTSBP07858 339 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 HNRNPA1P09651 372 aaKnown RBP eCLIP14.01□□□□□ -0.17
UPF1-204ENST00000596842 TMIGD3P0DMS9 266 aaPredicted RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 NAGAP17050 411 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 MNX1P50219 401 aaPredicted RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 ZP1P60852 638 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 BDH1Q02338 343 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 AANATQ16613 207 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 ZNF425Q6IV72 752 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 LEG1Q6P5S2 330 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 BTN2A1Q7KYR7 527 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 SLITRK4Q8IW52 837 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 OR6M1Q8NGM8 313 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 OR9A4Q8NGU2 314 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 MOSPD2Q8NHP6 518 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 SMIM19Q96E16 107 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 PRMT8Q9NR22 394 aaPredicted RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 CA10Q9NS85 328 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 LAMA1P25391 3075 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 RTTNQ86VV8 2226 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 URADA6NGE7 173 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 UGT2B7P16662 529 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 POU3F2P20265 443 aaPredicted RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 PSMB1P20618 241 aaKnown RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 CCR9P51686 369 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 RPS15P62841 145 aaKnown RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 ELP2Q6IA86 826 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 OR5M10Q6IEU7 315 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 FCAMRQ8WWV6 532 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 SPACA7Q96KW9 195 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 SERINC2Q96SA4 455 aa14.01□□□□□ -0.17
UPF1-204ENST00000596842 RPP25Q9BUL9 199 aaKnown RBP14.01□□□□□ -0.17
UPF1-204ENST00000596842 CARNS1A5YM72 827 aa14□□□□□ -0.17
UPF1-204ENST00000596842 HLA-DQA2P01906 255 aa14□□□□□ -0.17
UPF1-204ENST00000596842 MMP15P51511 669 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ACTC1P68032 377 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ACTA1P68133 377 aa14□□□□□ -0.17
UPF1-204ENST00000596842 TFF2Q03403 129 aa14□□□□□ -0.17
UPF1-204ENST00000596842 SLC22A10Q63ZE4 541 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ARHGAP11AQ6P4F7 1023 aa14□□□□□ -0.17
UPF1-204ENST00000596842 TMEM65Q6PI78 240 aa14□□□□□ -0.17
UPF1-204ENST00000596842 KIRREL2Q6UWL6 708 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ABHD13Q7L211 337 aa14□□□□□ -0.17
UPF1-204ENST00000596842 RBM18Q96H35 190 aaKnown RBP14□□□□□ -0.17
UPF1-204ENST00000596842 Q96M85 177 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ADAD1Q96M93 576 aaKnown RBP14□□□□□ -0.17
UPF1-204ENST00000596842 SFXN2Q96NB2 322 aa14□□□□□ -0.17
UPF1-204ENST00000596842 HRASLS2Q9NWW9 162 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ST6GALNAC2Q9UJ37 374 aa14□□□□□ -0.17
UPF1-204ENST00000596842 C19orf53Q9UNZ5 99 aaPredicted RBP14□□□□□ -0.17
UPF1-204ENST00000596842 NPFFR2Q9Y5X5 522 aa14□□□□□ -0.17
UPF1-204ENST00000596842 BRWD1Q9NSI6 2320 aa14□□□□□ -0.17
UPF1-204ENST00000596842 HEATR5AQ86XA9 2040 aa14□□□□□ -0.17
UPF1-204ENST00000596842 A0A1W2PPL8 197 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ZNF879B4DU55 563 aa14□□□□□ -0.17
UPF1-204ENST00000596842 KRT33AO76009 404 aa14□□□□□ -0.17
UPF1-204ENST00000596842 GPANK1O95872 356 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ZNF10P21506 573 aaPredicted RBP14□□□□□ -0.17
UPF1-204ENST00000596842 MAT1AQ00266 395 aaKnown RBP14□□□□□ -0.17
UPF1-204ENST00000596842 GPR18Q14330 331 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ZNHIT3Q15649 155 aaPredicted RBP14□□□□□ -0.17
UPF1-204ENST00000596842 RBP7Q96R05 134 aa14□□□□□ -0.17
UPF1-204ENST00000596842 KCNK15Q9H427 330 aa14□□□□□ -0.17
UPF1-204ENST00000596842 MKKSQ9NPJ1 570 aaPredicted RBP14□□□□□ -0.17
UPF1-204ENST00000596842 NRIP3Q9NQ35 241 aa14□□□□□ -0.17
UPF1-204ENST00000596842 ACTR10Q9NZ32 417 aa14□□□□□ -0.17
UPF1-204ENST00000596842 NCDNQ9UBB6 729 aa14□□□□□ -0.17
UPF1-204ENST00000596842 SCP2D1Q9UJQ7 156 aa14□□□□□ -0.17
UPF1-204ENST00000596842 CAMK2AQ9UQM7 478 aa14□□□□□ -0.17
UPF1-204ENST00000596842 TRBV23-1A0A0A0MS06 115 aa14□□□□□ -0.17
UPF1-204ENST00000596842 PRICKLE3O43900 615 aaPredicted RBP14□□□□□ -0.17
UPF1-204ENST00000596842 ATP1B1P05026 303 aa14□□□□□ -0.17
UPF1-204ENST00000596842 HPGDP15428 266 aa14□□□□□ -0.17
UPF1-204ENST00000596842 C1orf61Q13536 156 aa14□□□□□ -0.17
UPF1-204ENST00000596842 OPCMLQ14982 345 aa14□□□□□ -0.17
UPF1-204ENST00000596842 COL28A1Q2UY09 1125 aa14□□□□□ -0.17
UPF1-204ENST00000596842 LINC00303Q3SY05 128 aa14□□□□□ -0.17
UPF1-204ENST00000596842 RNF113BQ8IZP6 322 aaKnown RBP14□□□□□ -0.17
UPF1-204ENST00000596842 ZDHHC1Q8WTX9 485 aa14□□□□□ -0.17
UPF1-204ENST00000596842 S100A16Q96FQ6 103 aaKnown RBP14□□□□□ -0.17
UPF1-204ENST00000596842 NDUFB2O95178 105 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 CSN2P05814 226 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 TRAM1Q15629 374 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 HAGHLQ6PII5 290 aaPredicted RBP13.99□□□□□ -0.17
UPF1-204ENST00000596842 CORO6Q6QEF8 472 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 SAMD14Q8IZD0 417 aaPredicted RBP13.99□□□□□ -0.17
UPF1-204ENST00000596842 CAMKVQ8NCB2 501 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 THEM6Q8WUY1 208 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 PLA2G2FQ9BZM2 168 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 PRDM9Q9NQV7 894 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 C2orf42Q9NWW7 574 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 ABRACLQ9P1F3 81 aa13.99□□□□□ -0.17
UPF1-204ENST00000596842 ZNF175Q9Y473 711 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms