RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CLDN17P56750 224 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 NKX6-1P78426 367 aaPredicted RBP21■□□□□ 0.95
SHMT1-206ENST00000579558 C1DQ13901 141 aaKnown RBP21■□□□□ 0.95
SHMT1-206ENST00000579558 H1FNTQ75WM6 255 aaPredicted RBP21■□□□□ 0.95
SHMT1-206ENST00000579558 ZNF611Q8N823 705 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 C1orf162Q8NEQ5 155 aaPredicted RBP21■□□□□ 0.95
SHMT1-206ENST00000579558 PROX1Q92786 737 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 ELAC2Q9BQ52 826 aaKnown RBP21■□□□□ 0.95
SHMT1-206ENST00000579558 B3GAT1Q9P2W7 334 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 CORINQ9Y5Q5 1042 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 OR6C65A6NJZ3 312 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 BGLAPP02818 100 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 CD99P14209 185 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 NQO1P15559 274 aaKnown RBP20.99■□□□□ 0.95
SHMT1-206ENST00000579558 SEC24CP53992 1094 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 LGALS3BPQ08380 585 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 ADAM5Q6NVV9 412 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 C17orf78Q8N4C9 275 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 C10orf53Q8N6V4 93 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 ADPRHL1Q8NDY3 354 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 KBTBD8Q8NFY9 601 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 LILRB1Q8NHL6 650 aaPredicted RBP20.99■□□□□ 0.95
SHMT1-206ENST00000579558 ADAMTS16Q8TE57 1224 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 TMUB1Q9BVT8 246 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 ASPNQ9BXN1 380 aa20.99■□□□□ 0.95
SHMT1-206ENST00000579558 TRAPPC13A5PLN9 417 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 ZNF587BE7ETH6 402 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 CDH2P19022 906 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-206ENST00000579558 HOXC12P31275 282 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 ZNF83P51522 516 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 LTBQ06643 244 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 FOXD4Q12950 439 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-206ENST00000579558 LINC00114Q6XXX2 140 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 ARPINQ7Z6K5 226 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 CARM1Q86X55 608 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 LRRC75A-AS1Q8N1F1 130 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 WFDC11Q8NEX6 87 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 OR2T12Q8NG77 320 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 TMEM171Q8WVE6 324 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 NEUROG1Q92886 237 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 FBXW5Q969U6 566 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 MOGAT1Q96PD6 335 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 ALKBH3Q96Q83 286 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-206ENST00000579558 FAM107BQ9H098 131 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 SLC17A5Q9NRA2 495 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 BAG5Q9UL15 447 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 SLC7A7Q9UM01 511 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 RCE1Q9Y256 329 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 AMDHD2Q9Y303 409 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 SH3GLB1Q9Y371 365 aa20.98■□□□□ 0.95
SHMT1-206ENST00000579558 C2CD3Q4AC94 2353 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 IFNA14P01570 189 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 ZNF672Q499Z4 452 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-206ENST00000579558 LRRC23Q53EV4 343 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-206ENST00000579558 SHEQ5VZ18 495 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 KLHL17Q6TDP4 642 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 TMEM108Q6UXF1 575 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 WDR88Q6ZMY6 472 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 TSPYL5Q86VY4 417 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-206ENST00000579558 MICU2Q8IYU8 434 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 SCAIQ8N9R8 606 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 WDR31Q8NA23 367 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 PERPQ96FX8 193 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 SLC41A3Q96GZ6 507 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 NSRP1Q9H0G5 558 aaKnown RBP20.97■□□□□ 0.95
SHMT1-206ENST00000579558 PCDHAC1Q9H158 963 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 CMTM6Q9NX76 183 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 AP3M1Q9Y2T2 418 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 ZFHX3Q15911 3703 aa20.97■□□□□ 0.95
SHMT1-206ENST00000579558 MAP1AP78559 2803 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-206ENST00000579558 CADP27708 2225 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 LOC102725191A0A1B0GVB3 256 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 LRRN3E7EW58 273 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 ABCD4O14678 606 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 ARHGEF9O43307 516 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 AKAP8O43823 692 aaKnown RBP20.96■□□□□ 0.95
SHMT1-206ENST00000579558 UPK3AO75631 287 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 LYPD3O95274 346 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 THY1P04216 161 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 TNFRSF1BP20333 461 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 PMS2P3Q13401 168 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 TTC33Q6PID6 262 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-206ENST00000579558 KLHL24Q6TFL4 600 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 TREML1Q86YW5 311 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 KRTAP1-3Q8IUG1 177 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 UEVLDQ8IX04 471 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 IGFBPL1Q8WX77 278 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 C1QTNF6Q9BXI9 259 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 LINC00470Q9BZP3 86 aa20.96■□□□□ 0.95
SHMT1-206ENST00000579558 MRPL39Q9NYK5 338 aaKnown RBP20.96■□□□□ 0.95
SHMT1-206ENST00000579558 SETD2Q9BYW2 2564 aaPredicted RBP20.95■□□□□ 0.95
SHMT1-206ENST00000579558 ELOVL7A1L3X0 281 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 MS4A18H0YCH9 400 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 M0R1B8 84 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 TRAF3IP2O43734 574 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-206ENST00000579558 SLC43A1O75387 559 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 ZNF432O94892 652 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 HPRP00739 348 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 MT-ATP6P00846 226 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 KDELR2P33947 212 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms