RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ADH7P40394 386 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 RAG2P55895 527 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 SNTB2Q13425 540 aaKnown RBP20.78■□□□□ 0.92
VPS53-211ENST00000571805 GSG1Q2KHT4 349 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ELOA3BQ3SY89 546 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 HES5Q5TA89 166 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 LYPD8Q6UX82 237 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 MED25Q71SY5 747 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ZNF767PQ75MW2 155 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 BTN2A1Q7KYR7 527 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 SLC35F3Q8IY50 421 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 METTL27Q8N6F8 245 aaPredicted RBP20.78■□□□□ 0.92
VPS53-211ENST00000571805 ZNF511Q8NB15 262 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 ELOA3Q8NG57 546 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 MMABQ96EY8 250 aaPredicted RBP20.78■□□□□ 0.92
VPS53-211ENST00000571805 MOGAT1Q96PD6 335 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 SLC25A18Q9H1K4 315 aa20.78■□□□□ 0.92
VPS53-211ENST00000571805 A0A087WV48 116 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 CXCL3P19876 107 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 DPP4P27487 766 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 GRK6P43250 576 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 SLC25A1P53007 311 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 SLC22A10Q63ZE4 541 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 TSSK2Q96PF2 358 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 RXFP3Q9NSD7 469 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 STMN3Q9NZ72 180 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 ING4Q9UNL4 249 aa20.77■□□□□ 0.92
VPS53-211ENST00000571805 A0A0C4DFX4 3053 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 A0A1B0GTQ1 180 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 AIPO00170 330 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 SERPINI2O75830 405 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 H2AFB2P0C5Z0 115 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 PNMTP11086 282 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 GDNFP39905 211 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 CBLN3Q6UW01 205 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 ZNF524Q96C55 264 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 SLC25A38Q96DW6 304 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 GPR174Q9BXC1 333 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 PRODH2Q9UF12 536 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 SLC23A1Q9UHI7 598 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 ZNF222Q9UK12 451 aa20.77■□□□□ 0.91
VPS53-211ENST00000571805 CACNA1IQ9P0X4 2223 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 PDCD5O14737 125 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 CD14P08571 375 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 BLKP51451 505 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 EGR4Q05215 589 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 LTBQ06643 244 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 SKP2Q13309 424 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 PARGQ86W56 976 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 MS4A3Q96HJ5 214 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 MAP6Q96JE9 813 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 UBQLN4Q9NRR5 601 aa20.76■□□□□ 0.91
VPS53-211ENST00000571805 ZNF275Q9NSD4 429 aaPredicted RBP20.76■□□□□ 0.91
VPS53-211ENST00000571805 APEHP13798 732 aaKnown RBP20.75■□□□□ 0.91
VPS53-211ENST00000571805 MST1P26927 711 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 GALNSP34059 522 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 LTBRP36941 435 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 ST3GAL2Q16842 350 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 APOOLQ6UXV4 268 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 SLC16A9Q7RTY1 509 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 ZNF527Q8NB42 609 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 C7orf57Q8NEG2 295 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 KLHDC7BQ96G42 594 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 PLEKHA1Q9HB21 404 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 MMP25Q9NPA2 562 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 RABL2AQ9UBK7 228 aaPredicted RBP20.75■□□□□ 0.91
VPS53-211ENST00000571805 RABL2BQ9UNT1 228 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 KLHDC2Q9Y2U9 406 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 THADAQ6YHU6 1953 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.75■□□□□ 0.91
VPS53-211ENST00000571805 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.75■□□□□ 0.91
VPS53-211ENST00000571805 CAPZBP47756 277 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 ANGPT1Q15389 498 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 SLC6A19Q695T7 634 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 JAZF1Q86VZ6 243 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 ZNF321PQ8N8H1 164 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 GPR137Q96N19 417 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 RANBP3Q9H6Z4 567 aaPredicted RBP20.75■□□□□ 0.91
VPS53-211ENST00000571805 NANSQ9NR45 359 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 GMEB2Q9UKD1 530 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 CEP290O15078 2479 aa20.75■□□□□ 0.91
VPS53-211ENST00000571805 CHURC1-FNTBB4DL54 471 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 UPK3AO75631 287 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 SYPP08247 313 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 ASAH2BP0C7U1 165 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 ANXA3P12429 323 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 SDHBP21912 280 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 FNTBP49356 437 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 STPG1Q5TH74 334 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 NANOGNBQ7Z5D8 188 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 C10orf53Q8N6V4 93 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 ZNF433Q8N7K0 673 aaPredicted RBP20.74■□□□□ 0.91
VPS53-211ENST00000571805 OR7G1Q8NGA0 311 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 OR11H4Q8NGC9 324 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 PHOSPHO1Q8TCT1 267 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 TSPAN10Q9H1Z9 355 aaPredicted RBP20.74■□□□□ 0.91
VPS53-211ENST00000571805 MRM2Q9UI43 246 aaKnown RBP20.74■□□□□ 0.91
VPS53-211ENST00000571805 MGAT4AQ9UM21 535 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 MOKQ9UQ07 419 aa20.74■□□□□ 0.91
VPS53-211ENST00000571805 A0A1W2PPC4 97 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms