RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 H1FNTQ75WM6 255 aaPredicted RBP19.35■□□□□ 0.69
SNX1-210ENST00000560260 RNF113BQ8IZP6 322 aaKnown RBP19.35■□□□□ 0.69
SNX1-210ENST00000560260 ZIC4Q8N9L1 334 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 OR9K2Q8NGE7 335 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 OR5J2Q8NH18 312 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 LILRB4Q8NHJ6 448 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 LIPHQ8WWY8 451 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 ALPK1Q96QP1 1244 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 GPA33Q99795 319 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 ASPNQ9BXN1 380 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 GP6Q9HCN6 339 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 NANSQ9NR45 359 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 RASD1Q9Y272 281 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 B3GALT5Q9Y2C3 310 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 NKX2-6A6NCS4 301 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 ERICH4A6NGS2 130 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 ZNF724A8MTY0 619 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 TNFRSF11BO00300 401 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 PLPP3O14495 311 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 CDC42EP2O14613 210 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 DVL2O14641 736 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 TIPRLO75663 272 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 HLA-DOBP13765 273 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 OMPP47874 163 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 HMGA2P52926 109 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 IST1P53990 364 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 SMIM11AP58511 58 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 PMS2P3Q13401 168 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 FHL1Q13642 323 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 LAPTM4AQ15012 233 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 GTF2IRD2BQ6EKJ0 949 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.34■□□□□ 0.69
SNX1-210ENST00000560260 GPAT4Q86UL3 456 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 GTF2IRD2Q86UP8 949 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 EPHX4Q8IUS5 362 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 OR6K3Q8NGY3 331 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 FAM46AQ96IP4 442 aaKnown RBP19.34■□□□□ 0.69
SNX1-210ENST00000560260 ZNF385AQ96PM9 386 aaKnown RBP19.34■□□□□ 0.69
SNX1-210ENST00000560260 RAB3IPQ96QF0 476 aaPredicted RBP19.34■□□□□ 0.69
SNX1-210ENST00000560260 SF3B5Q9BWJ5 86 aaKnown RBP19.34■□□□□ 0.69
SNX1-210ENST00000560260 OPN3Q9H1Y3 402 aaPredicted RBP19.34■□□□□ 0.69
SNX1-210ENST00000560260 C12orf49Q9H741 205 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 JKAMPQ9P055 326 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 EMC9Q9Y3B6 208 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 U3KQV3 271 aa19.34■□□□□ 0.69
SNX1-210ENST00000560260 CLDN14O95500 239 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 CST1P01037 141 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 POU4F3Q15319 338 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 TMEM225Q6GV28 225 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 NHLRC1Q6VVB1 395 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 TMEM179BQ7Z7N9 219 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 WDFY1Q8IWB7 410 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 OR9Q2Q8NGE9 314 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 OR13C2Q8NGS9 318 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 CA5BP1Q8WTZ4 195 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 TAS2R5Q9NYW4 299 aa19.33■□□□□ 0.69
SNX1-210ENST00000560260 SAMHD1Q9Y3Z3 626 aaKnown RBP19.33■□□□□ 0.69
SNX1-210ENST00000560260 KLF4O43474 513 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 TRAF3IP2O43734 574 aaPredicted RBP19.32■□□□□ 0.68
SNX1-210ENST00000560260 KRT36O76013 467 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 VAMP5O95183 116 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 TSPAN19P0C672 248 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 HOXB6P17509 224 aaKnown RBP19.32■□□□□ 0.68
SNX1-210ENST00000560260 UQCRC1P31930 480 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 TFF3Q07654 80 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 TMEM201Q5SNT2 666 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 TMPRSS11FQ6ZWK6 438 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 CREB3L2Q70SY1 520 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 NANOGNBQ7Z5D8 188 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 ZER1Q7Z7L7 766 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 MOSPD2Q8NHP6 518 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 OXGR1Q96P68 337 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 REEP1Q9H902 201 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 ARMC1Q9NVT9 282 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 CACNA1CQ13936 2221 aa19.32■□□□□ 0.68
SNX1-210ENST00000560260 EFCAB9A8MZ26 197 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 EEF1E1-BLOC1S5C9J1V9 151 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 EEF1E1O43324 174 aaKnown RBP19.31■□□□□ 0.68
SNX1-210ENST00000560260 SMNDC1O75940 238 aaKnown RBP eCLIP19.31■□□□□ 0.68
SNX1-210ENST00000560260 ADORA3P0DMS8 318 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 ZNF26P17031 533 aaPredicted RBP19.31■□□□□ 0.68
SNX1-210ENST00000560260 RPS4XP62701 263 aaKnown RBP19.31■□□□□ 0.68
SNX1-210ENST00000560260 PUDPQ08623 228 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 SLC25A35Q3KQZ1 300 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 EEF1A1P5Q5VTE0 462 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 ZNF770Q6IQ21 691 aaPredicted RBP19.31■□□□□ 0.68
SNX1-210ENST00000560260 TFAP2EQ6VUC0 442 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 GALNT5Q7Z7M9 940 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 LUZP2Q86TE4 346 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 PYDC1Q8WXC3 89 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 TACO1Q9BSH4 297 aaKnown RBP19.31■□□□□ 0.68
SNX1-210ENST00000560260 NTN4Q9HB63 628 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 FANCFQ9NPI8 374 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 EMC3Q9P0I2 261 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 TMCC3Q9ULS5 477 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 PROCRQ9UNN8 238 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 AP4S1Q9Y587 144 aa19.31■□□□□ 0.68
SNX1-210ENST00000560260 TRAV27A0A087WT01 109 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 LOC102725191A0A1B0GVB3 256 aa19.3■□□□□ 0.68
SNX1-210ENST00000560260 HTR3EA5X5Y0 456 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms