RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MED18Q9BUE0 208 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 DUSP23Q9BVJ7 150 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 RTN4RQ9BZR6 473 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 FN3KQ9H479 309 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 UBQLN4Q9NRR5 601 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 CTSFQ9UBX1 484 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 ICAM5Q9UMF0 924 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 SLC35A3Q9Y2D2 325 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 A0A087WUJ7 227 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 A0A1B0GVC2 190 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 A6NIN4 97 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 ZSCAN5BA6NJL1 495 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 CD8B2A6NJW9 211 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 GTPBP1O00178 669 aaKnown RBP9.8□□□□□ -0.84
CLIP1-210ENST00000538120 HCN1O60741 890 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 IGHA1P01876 353 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 HLA-DQB1P01920 261 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 CD8BP10966 210 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 ARSBP15848 533 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 SLC1A3P43003 542 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 EVX1P49640 407 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 CRYZQ08257 329 aaKnown RBP9.8□□□□□ -0.84
CLIP1-210ENST00000538120 C19orf57Q0VDD7 668 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 EBPQ15125 230 aaKnown RBP9.8□□□□□ -0.84
CLIP1-210ENST00000538120 NSDHLQ15738 373 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 SWI5Q1ZZU3 235 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 FCRLBQ6BAA4 426 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 LIX1LQ8IVB5 337 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 PRR22Q8IZ63 422 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 BMPERQ8N8U9 685 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 DUSP18Q8NEJ0 188 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 PIGKQ92643 395 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 UFD1Q92890 307 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 KISS1RQ969F8 398 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-210ENST00000538120 KIAA1143Q96AT1 154 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-210ENST00000538120 IFT27Q9BW83 186 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 NRSN2Q9GZP1 204 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 CMC2Q9NRP2 79 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 SLC23A1Q9UHI7 598 aa9.8□□□□□ -0.84
CLIP1-210ENST00000538120 TNRC6BQ9UPQ9 1833 aaKnown RBP9.8□□□□□ -0.84
CLIP1-210ENST00000538120 IGKV1D-42A0A075B6H8 117 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 FAM221AA4D161 298 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 LRRN3E7EW58 273 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 LANCL1O43813 399 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 TSC22D2O75157 780 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 TIAF1O95411 115 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 CELP19835 753 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 SDHBP21912 280 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 GABRA5P31644 462 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 UQCRC1P31930 480 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 CLDN20P56880 219 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 PPP3R1P63098 170 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 SKP2Q13309 424 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 RHBDD2Q6NTF9 364 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 CBLN3Q6UW01 205 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 LHFPL2Q6ZUX7 228 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 LANCL3Q6ZV70 420 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 MEPCEQ7L2J0 689 aaKnown RBP9.79□□□□□ -0.84
CLIP1-210ENST00000538120 OAFQ86UD1 273 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 PLCZ1Q86YW0 608 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 SIRT6Q8N6T7 355 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 LRRC17Q8N6Y2 441 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 PLPP5Q8NEB5 264 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 AP3S1Q92572 193 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 TMEM43Q9BTV4 400 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 JAM3Q9BX67 310 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 LRRN3Q9H3W5 708 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ZFAND3Q9H8U3 227 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ISYNA1Q9NPH2 558 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 MKKSQ9NPJ1 570 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-210ENST00000538120 RPS6KB2Q9UBS0 482 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ATPIF1Q9UII2 106 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 VCANP13611 3396 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 CABIN1Q9Y6J0 2220 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 COL6A3P12111 3177 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 RP1P56715 2156 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 CDC14CA4D256 554 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 PPP1R3DO95685 299 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ANKRD34CP0C6C1 535 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 PRKAR1AP10644 381 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 MST1P26927 711 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 RRAS2P62070 204 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ZNF791Q3KP31 576 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-210ENST00000538120 DBX2Q6ZNG2 339 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 SHISA6Q6ZSJ9 500 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 NR2C2APQ86WQ0 139 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 MARCH9Q86YJ5 346 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 SLITRK4Q8IW52 837 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ZNF440Q8IYI8 595 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 SLC38A6Q8IZM9 456 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ARIH2OSQ8N7S6 290 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ZNF441Q8N8Z8 693 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 SLC37A3Q8NCC5 494 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 OR2I1PQ8NGU4 316 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 OR14A16Q8NHC5 309 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 OIT3Q8WWZ8 545 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 OTULINQ96BN8 352 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ZC3HAV1LQ96H79 300 aaKnown RBP9.79□□□□□ -0.84
CLIP1-210ENST00000538120 MED30Q96HR3 178 aa9.79□□□□□ -0.84
CLIP1-210ENST00000538120 ADOQ96SZ5 270 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms