RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CDK1P06493 297 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GP1BAP07359 652 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GPR89BP0CG08 455 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SPP1P10451 314 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 THRAP10827 490 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PSKH1P11801 424 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PRPS2P11908 318 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CD1EP15812 388 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RAB3AP20336 220 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HNF1AP20823 631 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C4BPBP20851 252 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GALP22466 123 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TUBG1P23258 451 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 S100PP25815 95 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GJB2P29033 226 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SSTR1P30872 391 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SHMT2P34897 504 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MPIP34949 423 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HMGCLP35914 325 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GPX4P36969 197 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SLC1A3P43003 542 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 KIR3DL2P43630 455 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CAMLGP49069 296 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RAB13P51153 203 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CCR4P51679 360 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NDST2P52849 883 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PRRX1P54821 245 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SLC12A3P55017 1021 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PSMD4P55036 377 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CLDN15P56746 228 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TAS2R60P59551 318 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RAB4BP61018 213 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ABCE1P61221 599 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HERVK_113P63132 956 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ERVK-25P63136 954 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 DEFA6Q01524 100 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 FLI1Q01543 452 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GNA12Q03113 381 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 BAMBIQ13145 260 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SRSF9Q13242 221 aaKnown RBP eCLIP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TRA2AQ13595 282 aaKnown RBP eCLIP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF273Q14593 569 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 LASP1Q14847 261 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GPNMBQ14956 572 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PDK2Q15119 407 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PON3Q15166 354 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 UGCGQ16739 394 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HYAL4Q2M3T9 481 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 AKIRIN2Q53H80 203 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SFT2D3Q587I9 215 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PAN3Q58A45 887 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 YIF1BQ5BJH7 314 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ACSBG2Q5FVE4 666 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ARMCX4Q5H9R4 360 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PAGE2BQ5JRK9 111 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C10orf120Q5SQS8 335 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ATAD3CQ5T2N8 411 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 LIN9Q5TKA1 542 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MLIPQ5VWP3 458 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 OR4C11Q6IEV9 310 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ANKRD26P1Q6NSI1 321 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SSX9Q7RTT3 188 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SLC16A13Q7RTY0 426 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 EFL1Q7Z2Z2 1120 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 FAM122BQ7Z309 247 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PRSS42Q7Z5A4 293 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF589Q86UQ0 364 aaPredicted RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SLC47A2Q86VL8 602 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GPBP1Q86WP2 473 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ECHDC2Q86YB7 292 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 HIPK1Q86Z02 1210 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C4orf19Q8IY42 314 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SLC22A15Q8IZD6 547 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MCOLN2Q8IZK6 566 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZCCHC7Q8N3Z6 543 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 MREGQ8N565 214 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 UBL4BQ8N7F7 174 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C17orf47Q8NEP4 570 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 OR4M2Q8NGB6 313 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 OR9Q2Q8NGE9 314 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 OR8J2Q8NGG1 315 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RNASE11Q8TAA1 199 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C11orf45Q8TAV5 145 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SETD6Q8TBK2 473 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 SPPL2AQ8TCT8 520 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PDCD6IPQ8WUM4 868 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TRUB1Q8WWH5 349 aaKnown RBP1.76□□□□□ -2.13
HMGB1-208ENST00000490788 LIPHQ8WWY8 451 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 THRSPQ92748 146 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 GTF2H4Q92759 462 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 UFD1Q92890 307 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 FGF11Q92914 225 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 RIT1Q92963 219 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 TLCD1Q96CP7 247 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 CMTM5Q96DZ9 223 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 ZHX1-C8orf76Q96EF9 292 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 PDXPQ96GD0 296 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C7orf34Q96L11 122 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 C9orf72Q96LT7 481 aa1.76□□□□□ -2.13
HMGB1-208ENST00000490788 NSMCE2Q96MF7 247 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms