RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GMPR2Q9P2T1 348 aaKnown RBP11.2□□□□□ -0.62
PRPF40A-203ENST00000448428 SH3GLB1Q9Y371 365 aa11.2□□□□□ -0.62
PRPF40A-203ENST00000448428 RNF115Q9Y4L5 304 aa11.2□□□□□ -0.62
PRPF40A-203ENST00000448428 SLC25A15Q9Y619 301 aa11.2□□□□□ -0.62
PRPF40A-203ENST00000448428 HEATR1Q9H583 2144 aaKnown RBP11.2□□□□□ -0.62
PRPF40A-203ENST00000448428 LOC102725191A0A1B0GVB3 256 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 ELOVL7A1L3X0 281 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 TRAPPC13A5PLN9 417 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 GMNCA6NCL1 334 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 LRRN3E7EW58 273 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 HS3ST1O14792 307 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CLOCKO15516 846 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CHP2O43745 196 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 HPRP00739 348 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CD3EP07766 207 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 ZNF43P17038 809 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 TNFRSF1BP20333 461 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 MPGP29372 298 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 LSP1P33241 339 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 KDELR2P33947 212 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 ADAM8P78325 824 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 C1DQ13901 141 aaKnown RBP11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 MFSD13AQ14CX5 517 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CYBRD1Q53TN4 286 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 ADAM5Q6NVV9 412 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 NIPAL3Q6P499 406 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 LINGO2Q7L985 606 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 SSX8Q7RTT4 187 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CPLX4Q7Z7G2 160 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CARM1Q86X55 608 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 TGIF2LYQ8IUE0 185 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 MICU2Q8IYU8 434 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 C10orf53Q8N6V4 93 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 WDR31Q8NA23 367 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 OR2T12Q8NG77 320 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 PROX1Q92786 737 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 NEUROG1Q92886 237 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 SLC41A3Q96GZ6 507 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CCL19Q99731 98 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 PIP5K1AQ99755 562 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 EFCAB1Q9HAE3 211 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 BAG5Q9UL15 447 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 ROS1P08922 2347 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 CADP27708 2225 aa11.19□□□□□ -0.62
PRPF40A-203ENST00000448428 AKAP9Q99996 3911 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 SNX3O60493 162 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 SHOX2O60902 331 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 SMPD2O60906 423 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 UPK3AO75631 287 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 KRT33AO76009 404 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 ZNF432O94892 652 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 IFNA14P01570 189 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 NQO1P15559 274 aaKnown RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 CDH2P19022 906 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 HOXC12P31275 282 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 OR1E2P47887 323 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 ZNF83P51522 516 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 IL1RL1Q01638 556 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 TGFBR3Q03167 851 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 LIPEQ05469 1076 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 PMS2P3Q13401 168 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 C8orf82Q6P1X6 216 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 TTC33Q6PID6 262 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 NHLRC1Q6VVB1 395 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 ARPINQ7Z6K5 226 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 ZNF611Q8N823 705 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 SCAIQ8N9R8 606 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 ADPRHL1Q8NDY3 354 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 C1orf162Q8NEQ5 155 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 IGFBPL1Q8WX77 278 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 HOPXQ9BPY8 73 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 PRSS27Q9BQR3 290 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 TMUB1Q9BVT8 246 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 C1QTNF6Q9BXI9 259 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 ASPNQ9BXN1 380 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 LINC00470Q9BZP3 86 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 SLC17A5Q9NRA2 495 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 MRPL39Q9NYK5 338 aaKnown RBP11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 SLC7A7Q9UM01 511 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 AP3M1Q9Y2T2 418 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 CORINQ9Y5Q5 1042 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 ALPK2Q86TB3 2170 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 F8P00451 2351 aa11.18□□□□□ -0.62
PRPF40A-203ENST00000448428 OR6C65A6NJZ3 312 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 ZNF587BE7ETH6 402 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 NME4O00746 187 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 PLPP3O14495 311 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 TRAF3IP2O43734 574 aaPredicted RBP11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 MT-ATP6P00846 226 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 HLA-DOBP13765 273 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 SLC7A2P52569 658 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 GNGT1P63211 74 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 SELENOWP63302 87 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 NKX6-1P78426 367 aaPredicted RBP11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 SLC25A3Q00325 362 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 LRRC23Q53EV4 343 aaPredicted RBP11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 HACD2Q6Y1H2 254 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 ABHD12BQ7Z5M8 362 aaPredicted RBP11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 KRTAP1-3Q8IUG1 177 aa11.17□□□□□ -0.62
PRPF40A-203ENST00000448428 UEVLDQ8IX04 471 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms