RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 USP53Q70EK8 1073 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.91□□□□□ -0.66
MSH6-204ENST00000445503 SHISA5Q8N114 240 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 OR2L13Q8N349 312 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 OR51D1Q8NGF3 324 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 HHIPL1Q96JK4 782 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 SPOCK3Q9BQ16 436 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 PRSS27Q9BQR3 290 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 ZNF350Q9GZX5 532 aa10.91□□□□□ -0.66
MSH6-204ENST00000445503 NOP16Q9Y3C1 178 aaKnown RBP10.91□□□□□ -0.66
MSH6-204ENST00000445503 DCDC2BA2VCK2 349 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 ACOT7O00154 380 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 CDK2P24941 298 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 MAPK3P27361 379 aaPredicted RBP10.9□□□□□ -0.66
MSH6-204ENST00000445503 LTBQ06643 244 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 NKPD1Q17RQ9 610 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 BEX5Q5H9J7 111 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 LIPNQ5VXI9 398 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 OR5M10Q6IEU7 315 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 Q6ZTK2 550 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 POMGNT2Q8NAT1 580 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 OR2T4Q8NH00 348 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 TMEM106AQ96A25 262 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 ATXN7L1Q9ULK2 861 aaPredicted RBP10.9□□□□□ -0.66
MSH6-204ENST00000445503 PLXND1Q9Y4D7 1925 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 TNFP01375 233 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 ADRB1P08588 477 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 RNH1P13489 461 aaKnown RBP10.9□□□□□ -0.66
MSH6-204ENST00000445503 VAMP1P23763 118 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 TSFMP43897 325 aaKnown RBP10.9□□□□□ -0.66
MSH6-204ENST00000445503 CAPZA2P47755 286 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 ADAM8P78325 824 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 ELP2Q6IA86 826 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 Q6ZSR6 202 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 GIMAP5Q96F15 307 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 CMKLR1Q99788 373 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 DLL4Q9NR61 685 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 KCNN3Q9UGI6 736 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 FBXL2Q9UKC9 423 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 ANAPC1Q9H1A4 1944 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 LAMA3Q16787 3333 aa10.9□□□□□ -0.66
MSH6-204ENST00000445503 ARPC4-TTLL3A0A0A6YYG9 625 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 B8ZZF3 427 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 CD2P06729 351 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 ERGP11308 486 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 SPI1P17947 270 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 ARHGDIBP52566 201 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 LGALSLQ3ZCW2 172 aaPredicted RBP10.9□□□□□ -0.67
MSH6-204ENST00000445503 ZNF658BQ4V348 819 aaPredicted RBP10.9□□□□□ -0.67
MSH6-204ENST00000445503 HACD4Q5VWC8 232 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 SFTPA2Q8IWL1 248 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 DUSP19Q8WTR2 217 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 C7orf50Q9BRJ6 194 aaKnown RBP10.9□□□□□ -0.67
MSH6-204ENST00000445503 TMEM185BQ9H7F4 350 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 TRPV4Q9HBA0 871 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 CPNE7Q9UBL6 633 aa10.9□□□□□ -0.67
MSH6-204ENST00000445503 IFITM5A6NNB3 132 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 LGALS8O00214 317 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 TFPIP10646 304 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 NFYAP23511 347 aaPredicted RBP10.89□□□□□ -0.67
MSH6-204ENST00000445503 MMP15P51511 669 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 ADPRHP54922 357 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 LRFN4Q6PJG9 635 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 TMEM52Q8NDY8 209 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 RPP25Q9BUL9 199 aaKnown RBP10.89□□□□□ -0.67
MSH6-204ENST00000445503 G6PC3Q9BUM1 346 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 TMEM74BQ9NUR3 256 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 ZNF35P13682 527 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 MAOAP21397 527 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 LINC00303Q3SY05 128 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 TMPRSS11FQ6ZWK6 438 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 SLC35F3Q8IY50 421 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 AVL9Q8NBF6 648 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 SMIM4Q8WVI0 70 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 RBPMSQ93062 196 aaKnown RBP10.89□□□□□ -0.67
MSH6-204ENST00000445503 SCMH1Q96GD3 660 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 MYADMQ96S97 322 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 KCNJ15Q99712 375 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 DHRS9Q9BPW9 319 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 GHITMQ9H3K2 345 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 FLRT3Q9NZU0 649 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 PRAF2O60831 178 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 KCNJ13O60928 360 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 APBB3O95704 486 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 IL12BP29460 328 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 SORDQ00796 357 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 ZNF425Q6IV72 752 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 KCTD9Q7L273 389 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 HSD17B8Q92506 261 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 MS4A3Q96HJ5 214 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 ADOQ96SZ5 270 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 SLC38A3Q99624 504 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 TBL1XR1Q9BZK7 514 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 SFXN1Q9H9B4 322 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 FKRPQ9H9S5 495 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 SLC17A4Q9Y2C5 497 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 RWDD3Q9Y3V2 267 aa10.89□□□□□ -0.67
MSH6-204ENST00000445503 SNRPNP63162 240 aaKnown RBP10.88□□□□□ -0.67
MSH6-204ENST00000445503 HHEXQ03014 270 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms