RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZNF41P51814 821 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-202ENST00000372405 TMED1Q13445 227 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 SGCBQ16585 318 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 MESTQ5EB52 335 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 ARMC4Q5T2S8 1044 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 HIST3H2AQ7L7L0 130 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 ZBTB46Q86UZ6 589 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 PHC2Q8IXK0 858 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 TMEM156Q8N614 296 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 PSD4Q8NDX1 1056 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 OR5M1Q8NGP8 315 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 OR5J2Q8NH18 312 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 HIST1H2ACQ93077 130 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 C1GALT1C1Q96EU7 318 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 MRGPRX4Q96LA9 322 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 CENPOQ9BU64 300 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 ANKRD10Q9NXR5 420 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 SLC6A5Q9Y345 797 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 MED13Q9UHV7 2174 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 ASPMQ8IZT6 3477 aa12.44□□□□□ -0.42
PTPRF-202ENST00000372405 C11orf98E9PRG8 122 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 LRRTM2O43300 516 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 GPX5O75715 221 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 AHSA1O95433 338 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 FREM3P0C091 2139 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 SPI1P17947 270 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 RPS3AP61247 264 aaKnown RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 C19orf57Q0VDD7 668 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 C1DQ13901 141 aaKnown RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 LIPKQ5VXJ0 399 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 LEG1Q6P5S2 330 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 EXD3Q8N9H8 876 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ATP6V1C2Q8NEY4 427 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ZNF417Q8TAU3 575 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 DYNC2LI1Q8TCX1 351 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ZFAND2BQ8WV99 257 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 NKD1Q969G9 470 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ZMYND19Q96E35 227 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ZNF587Q96SQ5 575 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 TBX5Q99593 518 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 CHCHD6Q9BRQ6 235 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ARHGAP9Q9BRR9 750 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 B3GNT4Q9C0J1 378 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 RACGAP1Q9H0H5 632 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 HPF1Q9NWY4 346 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 NDUFB11Q9NX14 153 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 CHCHD3Q9NX63 227 aaKnown RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 CNTRLQ7Z7A1 2325 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 CUL9Q8IWT3 2517 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 NCKAP5O14513 1909 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 LOC100506127A0A0U1RQW1 187 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 PLPP3O14495 311 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ZNF208O43345 1280 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 TFP02787 698 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 IMPDH2P12268 514 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 CPEP16870 476 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 GABREP78334 506 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 SLC22A10Q63ZE4 541 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 LYPD4Q6UWN0 246 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 C5orf46Q6UWT4 87 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ZNF227Q86WZ6 799 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 PLCZ1Q86YW0 608 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 DND1Q8IYX4 353 aaKnown RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 RFLNBQ8N5W9 214 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ACBD7Q8N6N7 88 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 TBC1D15Q8TC07 691 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 TRMT61AQ96FX7 289 aaKnown RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 TSSK2Q96PF2 358 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 PRRX2Q99811 253 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ISG20L2Q9H9L3 353 aaKnown RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 ZNF346Q9UL40 294 aaKnown RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 SPIN1Q9Y657 262 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-202ENST00000372405 PMF1-BGLAPU3KQ54 211 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 GVINP1Q7Z2Y8 2422 aa12.43□□□□□ -0.42
PTPRF-202ENST00000372405 H3BML4 177 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 H7C1C5 153 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 DCTN6O00399 190 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 OR2T1O43869 369 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 CRYBB2P43320 205 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 CLK1P49759 484 aaKnown RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 SH3BGRP55822 239 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 LCN6P62502 163 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 KRR1Q13601 381 aaKnown RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 GGTLC2Q14390 218 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 ACER2Q5QJU3 275 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 LINC01590Q5TEZ4 76 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 ZNF322Q6U7Q0 402 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 OR10H4Q8NGA5 316 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 OR4K17Q8NGC6 315 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 OR6S1Q8NH40 331 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 OR52N1Q8NH53 320 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 SPRYD4Q8WW59 207 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 SMPDL3BQ92485 455 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 GNRHR2Q96P88 292 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 UBL7Q96S82 380 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 ASPNQ9BXN1 380 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 RPRD1BQ9NQG5 326 aaKnown RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 MRPL39Q9NYK5 338 aaKnown RBP12.42□□□□□ -0.42
PTPRF-202ENST00000372405 GRHPRQ9UBQ7 328 aa12.42□□□□□ -0.42
PTPRF-202ENST00000372405 A0A0G2JMM0 328 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms