RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 NOS3P29474 1203 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 GRK5P34947 590 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 B3GALT5-AS1P59052 145 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 ARG2P78540 354 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 ALG10Q5BKT4 473 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 HIST3H2AQ7L7L0 130 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 MAMDC2Q7Z304 686 aaPredicted RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 SPARTQ8N0X7 666 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 ANKK1Q8NFD2 765 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 HIST1H2ACQ93077 130 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 PTP4A1Q93096 173 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 DDIT4LQ96D03 193 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 OR5B2Q96R09 309 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 FAM173AQ9BQD7 235 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 NRIP3Q9NQ35 241 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 PLCXD1Q9NUJ7 323 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 TPRKBQ9Y3C4 175 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 A0A087WZY1 265 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 TRIM64CA6NLI5 447 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 CLCA1A8K7I4 914 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 H0YC42 278 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 PLGP00747 810 aaPredicted RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 STSP08842 583 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 TSPAN19P0C672 248 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 CLUP10909 449 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 EIF2S3P41091 472 aaKnown RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 EIF1P41567 113 aaKnown RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 MAP2K4P45985 399 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 CD97P48960 835 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 CTXN1P60606 82 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 OCLNQ16625 522 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 CRTC2Q53ET0 693 aaPredicted RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 WIPI1Q5MNZ9 446 aaPredicted RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 DPY19L2P2Q6ZN68 376 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 KCTD8Q6ZWB6 473 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 SATL1Q86VE3 508 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 FAM83FQ8NEG4 500 aaPredicted RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 OR52E2Q8NGJ4 325 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 ZPLD1Q8TCW7 415 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 SMPDL3BQ92485 455 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 HAS2Q92819 552 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 Q96M85 177 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 SERINC1Q9NRX5 453 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 RYDENQ9NUL5 291 aaKnown RBP18.1■□□□□ 0.49
CLN3-250ENST00000636839 BLOC1S6Q9UL45 172 aa18.1■□□□□ 0.49
CLN3-250ENST00000636839 HTR3EA5X5Y0 456 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 LIPT2A6NK58 231 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 FAM166BA8MTA8 275 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 MT-ATP6P00846 226 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 MT-ND2P03891 347 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 ADORA3P0DMS8 318 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 AHCYP23526 432 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 GDF1P27539 372 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 ADH6P28332 368 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 PRPS1P60891 318 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 PMS2P3Q13401 168 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 CRMP1Q14194 572 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 AADACL4Q5VUY2 407 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 SLC25A25Q6KCM7 469 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 C3orf33Q6P1S2 294 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 OR5J2Q8NH18 312 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 OR14L1PQ8NHC6 308 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 COPS4Q9BT78 406 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 CMC2Q9NRP2 79 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 FKBP14Q9NWM8 211 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 TAS2R16Q9NYV7 291 aa18.09■□□□□ 0.49
CLN3-250ENST00000636839 PLPP3O14495 311 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 AKR7A3O95154 331 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 HLA-DOBP13765 273 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 SRD5A2P31213 254 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 GABARAPL2P60520 117 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 TEKQ02763 1124 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 ZNF91Q05481 1191 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 NEDD8Q15843 81 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 SLC25A30Q5SVS4 291 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 SDR9C7Q8NEX9 313 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 C5orf34Q96MH7 638 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 TEX12Q9BXU0 123 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 FN3KQ9H479 309 aa18.08■□□□□ 0.49
CLN3-250ENST00000636839 ACACAQ13085 2346 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 SH3D21A4FU49 640 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 OR2T1O43869 369 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 NME2P1O60361 137 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 GYPBP06028 91 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 NME2P22392 152 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 IDUAP35475 653 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 ST3GAL4Q11206 333 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 SELENBP1Q13228 472 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 ITGADQ13349 1161 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 FAM122BQ7Z309 247 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 MFSD8Q8NHS3 518 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 NMNAT3Q96T66 252 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 POTEKPQ9BYX7 375 aa18.08■□□□□ 0.48
CLN3-250ENST00000636839 TEX13CA0A0J9YWL9 993 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 A6NHS1 94 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 KDM4EB2RXH2 506 aaPredicted RBP18.07■□□□□ 0.48
CLN3-250ENST00000636839 ZNF814B7Z6K7 855 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 MS4A18H0YCH9 400 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 CD14P08571 375 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 DBTP11182 482 aaKnown RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms