RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 ISL1P61371 349 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 ACTG1P63261 375 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 AQP6Q13520 282 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 TSTA3Q13630 321 aaPredicted RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 RPS6KA2Q15349 733 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 CTF1Q16619 201 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 RGS21Q2M5E4 152 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 PRAMEF20Q5VT98 475 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF691Q5VV52 312 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 GLYATQ6IB77 296 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 SULT1C3Q6IMI6 304 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 RTL4Q6ZR62 310 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 GPRIN3Q6ZVF9 776 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 FRA10AC1Q70Z53 315 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 R3HCC1LQ7Z5L2 792 aaKnown RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 LDB1Q86U70 411 aaPredicted RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF611Q8N823 705 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 B3GNT7Q8NFL0 401 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 OR5K1Q8NHB7 308 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 MAGEE2Q8TD90 523 aaPredicted RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 S100ZQ8WXG8 99 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 KCNJ9Q92806 393 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 NEUROG1Q92886 237 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 SLC35B4Q969S0 331 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 VPS33AQ96AX1 596 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 INTS12Q96CB8 462 aaKnown RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 RHBDF1Q96CC6 855 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 NTNG2Q96CW9 530 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 YIPF6Q96EC8 236 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 SH3YL1Q96HL8 342 aaPredicted RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 CDKN2AIPNLQ96HQ2 116 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 RBM4BQ9BQ04 359 aaKnown RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 RBM4Q9BWF3 364 aaKnown RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 SFXN3Q9BWM7 321 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 UGT2B28Q9BY64 529 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 PROK2Q9HC23 129 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 PAK1IP1Q9NWT1 392 aaPredicted RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 ZNF226Q9NYT6 803 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 PDE10AQ9Y233 779 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 YARS2Q9Y2Z4 477 aaKnown RBP6.9□□□□□ -1.3
SMAD4-209ENST00000589941 SLC6A5Q9Y345 797 aa6.9□□□□□ -1.3
SMAD4-209ENST00000589941 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 A0A1W2PPL8 197 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 FAM220BPB1ANY3 271 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SUPT3HB4E1H0 165 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 CDC7O00311 574 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SLC1A7O00341 560 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 LSM1O15116 133 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SLC22A1O15245 554 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 BCAS1O75363 584 aaPredicted RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SUPT3HO75486 399 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 TNFSF13O75888 250 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 RSL1D1O76021 490 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 C1orf105O95561 183 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 GRPP07492 148 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 TFPTP0C1Z6 253 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 ERGP11308 486 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 PKMP14618 531 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 ELK4P28324 431 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 OPRL1P41146 370 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 GPR143P51810 404 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 CHRNB3Q05901 458 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 CD47Q08722 323 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 TRAF3Q13114 568 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 FADDQ13158 208 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SELPLGQ14242 412 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 GALEQ14376 348 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SPCS2Q15005 226 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 CNN3Q15417 329 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 TSNQ15631 228 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 NEDD8Q15843 81 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 NDUFA9Q16795 377 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 CTU2Q2VPK5 515 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 GFOD2Q3B7J2 385 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 GPR33Q49SQ1 333 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 LRIF1Q5T3J3 769 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 UGT3A1Q6NUS8 523 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 TTC23LQ6PF05 361 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SLC2A7Q6PXP3 512 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 CYP20A1Q6UW02 462 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 ADCK2Q7Z695 626 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 MSRB3Q8IXL7 192 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 LRRC25Q8N386 305 aaPredicted RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 ZCCHC7Q8N3Z6 543 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 RFLNBQ8N5W9 214 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 ZNF321PQ8N8H1 164 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 LILRB1Q8NHL6 650 aaPredicted RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 CD200R1Q8TD46 325 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 AKAP1Q92667 903 aaKnown RBP eCLIP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 GTF2H4Q92759 462 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 REXO5Q96IC2 774 aaKnown RBP6.89□□□□□ -1.31
SMAD4-209ENST00000589941 RNF145Q96MT1 663 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 OR1F2PQ96R84 312 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SPATA5L1Q9BVQ7 753 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 FUNDC2Q9BWH2 189 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 P2RY12Q9H244 342 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 DUSP21Q9H596 190 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 HMG20AQ9NP66 347 aa6.89□□□□□ -1.31
SMAD4-209ENST00000589941 SACM1LQ9NTJ5 587 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms