RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CDADC1Q9BWV3 514 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 KLHL1Q9NR64 748 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 TXNL4BQ9NX01 149 aaKnown RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 KLRF1Q9NZS2 232 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 CRNNQ9UBG3 495 aaPredicted RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 GRHPRQ9UBQ7 328 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 MOKQ9UQ07 419 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 LOXL2Q9Y4K0 774 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 PEX16Q9Y5Y5 336 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 KIF26BQ2KJY2 2108 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 PCNX3Q9H6A9 2034 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 A0A075B6Q4 140 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 TEX13CA0A0J9YWL9 993 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 TRDV1A0A1B0GX56 115 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 ZC3H12DA2A288 527 aaKnown RBP12.87□□□□□ -0.35
LIG3-205ENST00000585941 GMFGO60234 142 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 ZNF354AO60765 605 aaPredicted RBP12.87□□□□□ -0.35
LIG3-205ENST00000585941 OR2J2O76002 312 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 ZNF806P0C7X5 589 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 RORCP51449 518 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 NUBP1P53384 320 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 ACTA2P62736 377 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 ACTG2P63267 376 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 HSF2Q03933 536 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 RPL18Q07020 188 aaKnown RBP12.87□□□□□ -0.35
LIG3-205ENST00000585941 TRAM1Q15629 374 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 SGCBQ16585 318 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.87□□□□□ -0.35
LIG3-205ENST00000585941 FAM69BQ5VUD6 431 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 C1orf140Q5VVS0 124 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 LYPD8Q6UX82 237 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 ATP6V1C2Q8NEY4 427 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 SPACA9Q96E40 222 aaPredicted RBP12.87□□□□□ -0.35
LIG3-205ENST00000585941 NMNAT3Q96T66 252 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 KLHDC3Q9BQ90 382 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 RNF167Q9H6Y7 350 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 METTL7AQ9H8H3 244 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 PPP4R1LQ9P1A2 415 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 PADI1Q9ULC6 663 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 B3GALT1Q9Y5Z6 326 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 HS3ST3B1Q9Y662 390 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 VCANP13611 3396 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 KMT2EQ8IZD2 1858 aa12.87□□□□□ -0.35
LIG3-205ENST00000585941 TAF4O00268 1085 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 ETV2O00321 342 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 GALR2O43603 387 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 STK17BO94768 372 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 RAB40ALP0C0E4 278 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 CLUP10909 449 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 COX6A1P12074 109 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 PRKCAP17252 672 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 SPI1P17947 270 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 SNTA1Q13424 505 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 CRTC2Q53ET0 693 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 TMEM81Q6P7N7 255 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 POMZP3Q6PJE2 187 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 OPN5Q6U736 354 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 B3GLCTQ6Y288 498 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 NDUFAF7Q7L592 441 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 RAB11FIP2Q7L804 512 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 EGFL6Q8IUX8 553 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 OR5J2Q8NH18 312 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 RASD2Q96D21 266 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 LIN37Q96GY3 246 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 Q96M85 177 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 SNX18Q96RF0 628 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 RASL10BQ96S79 203 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 NUAK2Q9H093 628 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 CPNE5Q9HCH3 593 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 FBXL4Q9UKA2 621 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 PNMA8CA0A1B0GUJ8 204 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 TMEM72A0PK05 275 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 OR6C68A6NDL8 312 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 CDX4O14627 284 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 ZNF208O43345 1280 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 TRIM3O75382 744 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 GLCEO94923 617 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 RENP00797 406 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 GYPBP06028 91 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 ZNF12P17014 697 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 CELP19835 753 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 CD79BP40259 229 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 ZNF41P51814 821 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 RPS25P62851 125 aaKnown RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 RUNX1T1Q06455 604 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 INAQ16352 499 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 GXYLT1Q4G148 440 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 SLC25A53Q5H9E4 307 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 LEG1Q6P5S2 330 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 C6orf15Q6UXA7 325 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 KLBQ86Z14 1044 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 SYS1Q8N2H4 156 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 MFSD4AQ8N468 514 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 LSM14AQ8ND56 463 aaKnown RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 MRGPRX4Q96LA9 322 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 PTDSS2Q9BVG9 487 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 C6orf62Q9GZU0 229 aaPredicted RBP12.86□□□□□ -0.35
LIG3-205ENST00000585941 TOR4AQ9NXH8 423 aa12.86□□□□□ -0.35
LIG3-205ENST00000585941 POLHQ9Y253 713 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms