RNA–Protein interactions for RNA: ENST00000567737.1

SMG1-213, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, human

TSL 3

Gene SMG1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG1-213	ENST00000567737	KRTAP10-3	P60369	221 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	RPS23	P62266	143 aa	Known RBP	11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	KPRP	Q5T749	579 aa	Predicted RBP	11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	ZNF771	Q7L3S4	317 aa	Predicted RBP	11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	GPAT4	Q86UL3	456 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	LRP11	Q86VZ4	500 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	RAB1C	Q92928	201 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	PPCDC	Q96CD2	204 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	DDIT4L	Q96D03	193 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	MRRF	Q96E11	262 aa	Known RBP	11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	FAM120B	Q96EK7	910 aa	Known RBP	11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	SLC30A2	Q9BRI3	323 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	MRI1	Q9BV20	369 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	PIF1	Q9H611	641 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	MYEF2	Q9P2K5	600 aa	Known RBP	11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	PURG	Q9UJV8	347 aa	Known RBP	11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	PCDHGB4	Q9UN71	923 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	SNX24	Q9Y343	169 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	TIMM22	Q9Y584	194 aa		11.72	□□□□□ -0.53
SMG1-213	ENST00000567737	IGHV1-69-2	A0A0G2JMI3	117 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	HMX2	A2RU54	273 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	CCDC188	H7C350	402 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	NDUFA7	O95182	113 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ENO1	P06733	434 aa	Known RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	KRT16	P08779	473 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	IMPDH2	P12268	514 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	BCKDHA	P12694	445 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	CRYBB2	P43320	205 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	SELENOP	P49908	381 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	CCL8	P80075	99 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ROR2	Q01974	943 aa	Known RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	GUCY2D	Q02846	1103 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ZNF154	Q13106	437 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	PDCD1	Q15116	288 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	UAP1	Q16222	522 aa	Predicted RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	NKPD1	Q17RQ9	610 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	C2orf68	Q2NKX9	166 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ALKBH6	Q3KRA9	238 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ATP6AP1L	Q52LC2	224 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ZNF385B	Q569K4	471 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ARSJ	Q5FYB0	599 aa	Predicted RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	NOXRED1	Q6NXP6	359 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	LINGO2	Q7L985	606 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	MDP1	Q86V88	176 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	GTF3A	Q92664	365 aa	Known RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	PMM1	Q92871	262 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ZNF764	Q96H86	408 aa	Predicted RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	EGLN2	Q96KS0	407 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	ACTRT3	Q9BYD9	372 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	MRPL46	Q9H2W6	279 aa	Known RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	KCNF1	Q9H3M0	494 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	TCF7L1	Q9HCS4	588 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	C1RL	Q9NZP8	487 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	SH3BP4	Q9P0V3	963 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	DUSP13	Q9UII6	198 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	LEF1	Q9UJU2	399 aa	Predicted RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	FZR1	Q9UM11	496 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	FAF1	Q9UNN5	650 aa	Predicted RBP	11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	STK38L	Q9Y2H1	464 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	KCNE3	Q9Y6H6	103 aa		11.71	□□□□□ -0.53
SMG1-213	ENST00000567737	GOLGA6L6	A8MZA4	724 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	TRIM49D1	C9J1S8	452 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	HOXA3	O43365	443 aa	Predicted RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	UPK3A	O75631	287 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	FRK	P42685	505 aa	Predicted RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	ARF1	P84077	181 aa	Known RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	GALK2	Q01415	458 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	GPR68	Q15743	365 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	TRMT5	Q32P41	509 aa	Known RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	PCGF3	Q3KNV8	242 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	NIPAL3	Q6P499	406 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	TMEM154	Q6P9G4	183 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	FIP1L1	Q6UN15	594 aa	Known RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	EIF3M	Q7L2H7	374 aa	Known RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	TRIM44	Q96DX7	344 aa	Predicted RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	KCNA7	Q96RP8	456 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	MRPL57	Q9BQC6	102 aa	Known RBP	11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	NMUR2	Q9GZQ4	415 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	SERHL2	Q9H4I8	314 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	MMP26	Q9NRE1	261 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	UBAP1	Q9NZ09	502 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	SEC14L4	Q9UDX3	406 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	GPR160	Q9UJ42	338 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	RNF114	Q9Y508	228 aa		11.7	□□□□□ -0.54
SMG1-213	ENST00000567737	LOC100653049	A0A140TA62	436 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	ISPD	A4D126	451 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	ZNF503-AS2	A6NEH8	195 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	C17orf100	A8MU93	164 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	TPD52L2	O43399	206 aa	Known RBP	11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	TRAF3IP2	O43734	574 aa	Predicted RBP	11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	KRT34	O76011	436 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	RSL1D1	O76021	490 aa	Known RBP	11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	ZNF432	O94892	652 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	EFNA1	P20827	205 aa	Predicted RBP	11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	RYK	P34925	604 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	CALCOCO2	Q13137	446 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	ZNF141	Q15928	474 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	HFE	Q30201	348 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	SAMD5	Q5TGI4	173 aa		11.69	□□□□□ -0.54
SMG1-213	ENST00000567737	TMEM225	Q6GV28	225 aa		11.69	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 104 ms