RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 WFIKKN1Q96NZ8 548 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ZNF587Q96SQ5 575 aaPredicted RBP8.16□□□□□ -1.1
VPS35-206ENST00000565228 SPOCK3Q9BQ16 436 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 PRRG4Q9BZD6 226 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ADPRHL2Q9NX46 363 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 PAQR5Q9NXK6 330 aaPredicted RBP8.16□□□□□ -1.1
VPS35-206ENST00000565228 RIMS3Q9UJD0 308 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 V9GYQ6 96 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 FBN3Q75N90 2809 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 FAM221AA4D161 298 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 TRAPPC13A5PLN9 417 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 ELOA3DA6NLF2 546 aaPredicted RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 ZNF724A8MTY0 619 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 PDLIM1O00151 329 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 KPNA4O00629 521 aaPredicted RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 ACOT8O14734 319 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 ZNF682O95780 498 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 YES1P07947 543 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 FCGR2AP12318 317 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 ZNF26P17031 533 aaPredicted RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 CALB2P22676 271 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 IGHV1-2P23083 117 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 OR3A2P47893 321 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 SLC35A1P78382 337 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 PDK3Q15120 406 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 RNPS1Q15287 305 aaKnown RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 SEC23BQ15437 767 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 ZNF74Q16587 644 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 EXOC3L2Q2M3D2 409 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 ELOA3BQ3SY89 546 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 OTUD3Q5T2D3 398 aaPredicted RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 PDSS1Q5T2R2 415 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 PGM2L1Q6PCE3 622 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 PAQR6Q6TCH4 344 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 CYP2R1Q6VVX0 501 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 BHLHE22Q8NFJ8 381 aaPredicted RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 ELOA3Q8NG57 546 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 OR9K2Q8NGE7 335 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 SLC26A7Q8TE54 656 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 DNAJA4Q8WW22 397 aaPredicted RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 PROX1Q92786 737 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 ZNF837Q96EG3 531 aaPredicted RBP8.15□□□□□ -1.1
VPS35-206ENST00000565228 SLC47A1Q96FL8 570 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 TXNDC15Q96J42 360 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 FUZQ9BT04 418 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 PIGMQ9H3S5 423 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 ARMC7Q9H6L4 198 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 GORASP2Q9H8Y8 452 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 TMEM27Q9HBJ8 222 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 TAS2R5Q9NYW4 299 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 NDUFAF4Q9P032 175 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 PROCRQ9UNN8 238 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 RTTNQ86VV8 2226 aa8.15□□□□□ -1.1
VPS35-206ENST00000565228 TACC2O95359 2948 aa8.15□□□□□ -1.11
VPS35-206ENST00000565228 RAI1Q7Z5J4 1906 aaPredicted RBP8.15□□□□□ -1.11
VPS35-206ENST00000565228 TRAV36DV7A0A075B6V5 113 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 hCG_2039718K7EN88 272 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 DNPH1O43598 174 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 TRAF3IP2O43734 574 aaPredicted RBP8.14□□□□□ -1.11
VPS35-206ENST00000565228 UPK3AO75631 287 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 ZNF432O94892 652 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 OR5F1O95221 314 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 CH25HO95992 272 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 MT-ND1P03886 318 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 GPIP06744 558 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 ITGA5P08648 1049 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 UQCRBP14927 111 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 MAKP20794 623 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 UGT2B10P36537 528 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 CD79BP40259 229 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 SELENOPP49908 381 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 MAP2K6P52564 334 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 RIPPLY3P57055 190 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 CSNK2A1P68400 391 aaPredicted RBP8.14□□□□□ -1.11
VPS35-206ENST00000565228 BNIP1Q12981 228 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 IFI44LQ53G44 452 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 TSPO2Q5TGU0 170 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 C16orf89Q6UX73 402 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 CREB3L2Q70SY1 520 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 RANBP3LQ86VV4 465 aaPredicted RBP8.14□□□□□ -1.11
VPS35-206ENST00000565228 CXorf67Q86X51 503 aaPredicted RBP8.14□□□□□ -1.11
VPS35-206ENST00000565228 MCEMP1Q8IX19 187 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 SLC43A2Q8N370 569 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 FAM162AQ96A26 154 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 PRRC1Q96M27 445 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 GPA33Q99795 319 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 TMEM43Q9BTV4 400 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 CADM1Q9BY67 442 aaKnown RBP8.14□□□□□ -1.11
VPS35-206ENST00000565228 LIME1Q9H400 295 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 CHST11Q9NPF2 352 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 SLC7A10Q9NS82 523 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 KLHL28Q9NXS3 571 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 VNN3Q9NY84 501 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 STOML1Q9UBI4 398 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 RPS6KB2Q9UBS0 482 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 BAG5Q9UL15 447 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 AP3M1Q9Y2T2 418 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 TESMINQ9Y4I5 508 aa8.14□□□□□ -1.11
VPS35-206ENST00000565228 SPIN1Q9Y657 262 aaPredicted RBP8.14□□□□□ -1.11
VPS35-206ENST00000565228 A0A087WUU8 490 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms