RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 DNAJC12Q9UKB3 198 aa4.57□□□□□ -1.68
VPS35P1-201ENST00000563400 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.57□□□□□ -1.68
VPS35P1-201ENST00000563400 RAI2Q9Y5P3 530 aa4.57□□□□□ -1.68
VPS35P1-201ENST00000563400 MICAL3Q7RTP6 2002 aa4.57□□□□□ -1.68
VPS35P1-201ENST00000563400 WDR81Q562E7 1941 aa4.57□□□□□ -1.68
VPS35P1-201ENST00000563400 KCNE1BA0A087WTH5 132 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 KIR2DS5A0A0G2JLQ3 304 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 KBTBD11-OT1A0A1B0GTJ5 212 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SHISA7A6NL88 538 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 KIR2DS3K7RE56 304 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 RAMP3O60896 148 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 EGR2P11161 476 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MYOGP15173 224 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 XRCC1P18887 633 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PMCHP20382 165 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 BCKDHBP21953 392 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 LHCGRP22888 699 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 GRIA3P42263 894 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 BDKRB1P46663 353 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 GNPDA1P46926 289 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 NPBWR2P48146 333 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MRPL19P49406 292 aaKnown RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 EMP2P54851 167 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CLDN18P56856 261 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MLF1P58340 268 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 BTG1P62324 171 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PITX1P78337 314 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 GPS2Q13227 327 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 DCAF12Q5T6F0 453 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ZNF691Q5VV52 312 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PNCKQ6P2M8 343 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 DCUN1D2Q6PH85 259 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 RHBDF2Q6PJF5 856 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PAQR6Q6TCH4 344 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 LCLAT1Q6UWP7 414 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 Q6ZSN1 163 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CYS1Q717R9 158 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 NET1Q7Z628 596 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MOB3BQ86TA1 216 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PLD3Q8IV08 490 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 BOD1L2Q8IYS8 172 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 RCOR2Q8IZ40 523 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 C8orf31Q8N9H6 132 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 TTLQ8NG68 377 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 OR5B17Q8NGF7 314 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 OR52I1Q8NGK6 324 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 OR5L2Q8NGL0 311 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 OR4A4PQ8NGN8 299 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 OR5M9Q8NGP3 310 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CNIH3Q8TBE1 160 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 IGFBPL1Q8WX77 278 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 HSD17B8Q92506 261 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 C8orf44Q96CB5 159 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 RITA1Q96K30 269 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PPP1R36Q96LQ0 422 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SERPINB11Q96P15 392 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ADOQ96SZ5 270 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CCM2Q9BSQ5 444 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 DRC3Q9H069 523 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 NXF5Q9H1B4 397 aaKnown RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 EBF3Q9H4W6 596 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ALG9Q9H6U8 611 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SLC25A19Q9HC21 320 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SAMSN1Q9NSI8 373 aaKnown RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 DCAF13Q9NV06 445 aaKnown RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SLC39A1Q9NY26 324 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SIGLEC8Q9NYZ4 499 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 IL37Q9NZH6 218 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CLN8Q9UBY8 286 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 NAGKQ9UJ70 344 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 IKZF3Q9UKT9 509 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 INSL5Q9Y5Q6 135 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MMP24Q9Y5R2 645 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PTGDR2Q9Y5Y4 395 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 R4GN57 208 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 URGCP-MRPS24S4R325 110 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CITO14578 2027 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 GOLGA6L9A6NEM1 432 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 FABP12A6NFH5 140 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 P2RX6O15547 441 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 FCN3O75636 299 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 LRATO95237 230 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 TMEM50AO95807 157 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 LATS1O95835 1130 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 TSPAN13O95857 204 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CST4P01036 141 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 APOEP02649 317 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 TRIM49P0CI25 452 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 TRIM49CP0CI26 452 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CHRNB1P11230 501 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MLNP12872 115 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 NR2C1P13056 603 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ZNF43P17038 809 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PGCP20142 388 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MAGP20916 626 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CNR1P21554 472 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 P2RY2P41231 377 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SEC61BP60468 96 aaKnown RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 TWF1Q12792 350 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CNTN1Q12860 1018 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms