RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 MIF4GDA9UHW6 222 aaKnown RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 H0YC42 278 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 POLR1CO15160 346 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 TM9SF1O15321 606 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 CLOCKO15516 846 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 FAM189A1O60320 539 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 IDH1O75874 414 aaKnown RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 GOSR1O95249 250 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 GH1P01241 217 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 CD9P21926 228 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 DCKP27707 260 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 IFNA8P32881 189 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 GEMP55040 296 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 PLTPP55058 493 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 AQP4P55087 323 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 GNG2P59768 71 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 POLR2FP61218 127 aaKnown RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 ASIC1P78348 528 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 MYBPC1Q00872 1141 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 IFITM2Q01629 132 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 RAD51Q06609 339 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 CDC20Q12834 499 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 STX3Q13277 289 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 MAPRE2Q15555 327 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 KLHL38Q2WGJ6 581 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 RABL6Q3YEC7 729 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 KCTD21Q4G0X4 260 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF789Q5FWF6 425 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 NANOGP8Q6NSW7 305 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 ZFP1Q6P2D0 407 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 CD164L2Q6UWJ8 174 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 LPCAT2Q7L5N7 544 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 TMEM61Q8N0U2 210 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 BBOF1Q8ND07 529 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 OR7G3Q8NG95 312 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 FIBINQ8TAL6 211 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 NEIL3Q8TAT5 605 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 DTX3LQ8TDB6 740 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 HAS2Q92819 552 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 LHX4Q969G2 390 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 TADA1Q96BN2 335 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 EEF2KMTQ96G04 330 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 RPRD1AQ96P16 312 aaPredicted RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 PSKH2Q96QS6 385 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 UQCC2Q9BRT2 126 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 C1orf50Q9BV19 199 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 NTMT1Q9BV86 223 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 ACAT2Q9BWD1 397 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 GON7Q9BXV9 100 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 SLC17A9Q9BYT1 436 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 LRRC19Q9H756 370 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 RMND5AQ9H871 391 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 TUFT1Q9NNX1 390 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 DNAJC17Q9NVM6 304 aaKnown RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 MARCH5Q9NX47 278 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 TRPC4Q9UBN4 977 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 SLC7A8Q9UHI5 535 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 BCAP29Q9UHQ4 241 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 ATPIF1Q9UII2 106 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 APPL1Q9UKG1 709 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 KIAA1257Q9ULG3 409 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 PSMD13Q9UNM6 376 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 MAD1L1Q9Y6D9 718 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 A2ML1A8K2U0 1454 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 MAP2P11137 1827 aaKnown RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 LAMA4Q16363 1823 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 MYO5AQ9Y4I1 1855 aaKnown RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 RLFQ13129 1914 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 RIMBP3CA6NJZ7 1639 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 RIMBP3BA6NNM3 1639 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 RIMBP3Q9UFD9 1639 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ALKQ9UM73 1620 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 A0A087WXM4 84 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 A0A087X0T9 212 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 C13orf42A0A1B0GVH6 325 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ESYT2A0FGR8 921 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CLRN2A0PK11 232 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 A4D1N5 150 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 LRRIQ4A6NIV6 560 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 SNTNA6NMZ2 147 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 H3BNH8 94 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 AP3B1O00203 1094 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 PSMD12O00232 456 aaPredicted RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 LAD1O00515 517 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 NDUFA2O43678 99 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 H6PDO95479 791 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 STAMBPO95630 424 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 TIMP1P01033 207 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 FGGP02679 453 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 S100A6P06703 90 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 FAM228BP0C875 321 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CCDC130P13994 396 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CFL1P23528 166 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CXCR2P25025 360 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CASP1P29466 404 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 NMT1P30419 496 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 COILP38432 576 aaPredicted RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 KLK7P49862 253 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 SUCLG1P53597 346 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 AP2S1P53680 142 aaPredicted RBP2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms