RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CLCA3PQ9Y6N3 262 aa1.86□□□□□ -2.11
VRK1-202ENST00000553683 EVC2Q86UK5 1308 aa1.86□□□□□ -2.11
VRK1-202ENST00000553683 SMARCA2P51531 1590 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 PDS5BQ9NTI5 1447 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 KIF13AQ9H1H9 1805 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 CLRN2A0PK11 232 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 E9PBE3 544 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 NDC80O14777 642 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 RS1O15537 224 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 CXCL13O43927 109 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 PRPSAP2O60256 369 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 TRIM16O95361 564 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 IGHG4P01861 327 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 OPN1MWP04001 364 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 S100A6P06703 90 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 OPN1MW2P0DN77 364 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 OPN1MW3P0DN78 364 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 TROVE2P10155 538 aaKnown RBP eCLIP1.85□□□□□ -2.11
VRK1-202ENST00000553683 GAP43P17677 238 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 NT5EP21589 574 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 CMA1P23946 247 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 HOXA9P31269 272 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 SOX6P35712 828 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 RABIFP47224 123 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 ATP5OP48047 213 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 KLK7P49862 253 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 ETV1P50549 477 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 PLA2G16P53816 162 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 BIDP55957 195 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 GMFBP60983 142 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 B2MP61769 119 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 EWSR1Q01844 656 aaKnown RBP eCLIP1.85□□□□□ -2.11
VRK1-202ENST00000553683 PPIDQ08752 370 aaKnown RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 MESDQ14696 234 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 RCN1Q15293 331 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 NSUN5P1Q3KNT7 163 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 CCDC152Q4G0S7 254 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 TMEM41BQ5BJD5 291 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 LRRC31Q6UY01 552 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 SPATA24Q86W54 205 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 GRAMD2AQ8IUY3 354 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 NKAIN4Q8IVV8 208 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 RDH10Q8IZV5 341 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 C6orf223Q8N319 242 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 PDCL2Q8N4E4 241 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 FTMTQ8N4E7 242 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 TRIML2Q8N7C3 387 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 ZNF721Q8TF20 911 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 RNF139Q8WU17 664 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 SPRYD4Q8WW59 207 aaPredicted RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 RPUSD4Q96CM3 377 aaKnown RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 TUBGCP2Q9BSJ2 902 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 RSPO3Q9BXY4 272 aaPredicted RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 POLR1EQ9GZS1 481 aaKnown RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 NT5C3AQ9H0P0 336 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 LIN28AQ9H9Z2 209 aaKnown RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 DMAP1Q9NPF5 467 aaPredicted RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 PTBP2Q9UKA9 531 aaKnown RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 HPCAL4Q9UM19 191 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 CHTOPQ9Y3Y2 248 aaKnown RBP1.85□□□□□ -2.11
VRK1-202ENST00000553683 TIMM22Q9Y584 194 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 U3KQV3 271 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 CEP164Q9UPV0 1460 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 NSD2O96028 1365 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 CARMIL3Q8ND23 1372 aa1.85□□□□□ -2.11
VRK1-202ENST00000553683 TRAV6A0A075B6T7 132 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 SERPINE3A8MV23 424 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 UBXN8O00124 270 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 AGPAT2O15120 278 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 BET1O15155 118 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 NVLO15381 856 aaKnown RBP1.84□□□□□ -2.11
VRK1-202ENST00000553683 OR10H3O60404 316 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 ERLIN1O75477 346 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 YEATS4O95619 227 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 ADCY5O95622 1261 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 NPPAP01160 153 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 PLEKP08567 350 aaPredicted RBP1.84□□□□□ -2.11
VRK1-202ENST00000553683 RPSAP08865 295 aaKnown RBP1.84□□□□□ -2.11
VRK1-202ENST00000553683 COX5AP20674 150 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 CALCRP30988 508 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 LEPP41159 167 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 HAAOP46952 286 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 IFNAR2P48551 515 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 SULT1E1P49888 294 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 CCR6P51684 374 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 PLTPP55058 493 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 TNFRSF17Q02223 184 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 KLHL30Q0D2K2 578 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 PTGES3Q15185 160 aaKnown RBP1.84□□□□□ -2.11
VRK1-202ENST00000553683 SYCP1Q15431 976 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 UBE2SQ16763 222 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 PARP15Q460N3 678 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 CEP55Q53EZ4 464 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 CCDC183Q5T5S1 534 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 C12orf60Q5U649 245 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 AADACL4Q5VUY2 407 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 ATL3Q6DD88 541 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 ANGPTL8Q6UXH0 198 aa1.84□□□□□ -2.11
VRK1-202ENST00000553683 CENPQQ7L2Z9 268 aaPredicted RBP1.84□□□□□ -2.11
VRK1-202ENST00000553683 MOB3BQ86TA1 216 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms