RNA–Protein interactions for RNA: ENST00000539097.2

HIF1A-204, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-204ENST00000539097 MECOMQ03112 1051 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZIC1Q15915 447 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 SLC5A12Q1EHB4 618 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZNF658BQ4V348 819 aaPredicted RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 BOLA3Q53S33 107 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CCDC122Q5T0U0 273 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 GPRC6AQ5T6X5 926 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 OR2G6Q5TZ20 316 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 FAM219BQ5XKK7 198 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 LEMD1Q68G75 181 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 KCNIP4Q6PIL6 250 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 LRRC74BQ6ZQY2 392 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 C19orf35Q6ZS72 473 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 Q7L0L9 218 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 P4HA3Q7Z4N8 544 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 VSTM4Q8IW00 320 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 EFCAB13Q8IY85 973 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 COMMD1Q8N668 190 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZNF781Q8N8C0 355 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 EIF1ADQ8N9N8 165 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 SDR9C7Q8NEX9 313 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 OR10G4Q8NGN3 311 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CRYGNQ8WXF5 182 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 PIGCQ92535 297 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 PEX13Q92968 403 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ANKRD9Q96BM1 317 aaPredicted RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CPB2Q96IY4 423 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 KLHDC3Q9BQ90 382 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 PYGO2Q9BRQ0 406 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 UBAC1Q9BSL1 405 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CHCHD5Q9BSY4 110 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 APOOQ9BUR5 198 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 TBC1D10AQ9BXI6 508 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 SLC25A51Q9H1U9 297 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 DPH5Q9H2P9 285 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 NANSQ9NR45 359 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 PHF11Q9UIL8 331 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 GNPTGQ9UJJ9 305 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 TMCO1Q9UM00 188 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 PRPF19Q9UMS4 504 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 POLDIP2Q9Y2S7 368 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZSWIM8A7E2V4 1837 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 KIF1BO60333 1816 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 RGPD3A6NKT7 1758 aaPredicted RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 RGPD4Q7Z3J3 1758 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 RBBP6Q7Z6E9 1792 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 TNS1Q9HBL0 1735 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 TOPBP1Q92547 1522 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 UBN2Q6ZU65 1347 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ANKRD12Q6UB98 2062 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 A0A0B4J2A0 478 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 GMNCA6NCL1 334 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 PRRG1O14668 218 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZBTB5O15062 677 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CYTH3O43739 400 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CHST1O43916 411 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 UPK1BO75841 260 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 KBTBD11O94819 623 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZNF432O94892 652 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ATP1A1P05023 1023 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 LGALS2P05162 132 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 HOXD4P09016 255 aaPredicted RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ALPIP09923 528 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 OR9G9P0C7N8 305 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CBR1P16152 277 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 GALP22466 123 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 U2AF2P26368 475 aaKnown RBP eCLIP0.8□□□□□ -2.285e-9■■■■□ 19.5
HIF1A-204ENST00000539097 PSMB6P28072 239 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 LAP3P28838 519 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CHRNB4P30926 498 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 SPRP35270 261 aaPredicted RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ACADSBP45954 432 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 STARP49675 285 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 HMGCS2P54868 508 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 NDUFV3P56181 108 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 LYZP61626 148 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 VLDLRP98155 873 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 MRPL28Q13084 256 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 C1orf61Q13536 156 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 SERTAD2Q14140 314 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 EIF2B1Q14232 305 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 C15orf32Q32M92 178 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ALKBH6Q3KRA9 238 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZNF876PQ49A33 203 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 PAGE3Q5JUK9 113 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CELF3Q5SZQ8 465 aaKnown RBP0.8□□□□□ -2.28
HIF1A-204ENST00000539097 CARD17Q5XLA6 110 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZNF343Q6P1L6 599 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 DEGS2Q6QHC5 323 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 SPESP1Q6UW49 350 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 COPS6Q7L5N1 327 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 SLC22A9Q8IVM8 553 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZNF440Q8IYI8 595 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 LINC00518Q8N0U6 118 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 ZNF565Q8N9K5 539 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 OR9A4Q8NGU2 314 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 FCGR1BQ92637 280 aa0.8□□□□□ -2.28
HIF1A-204ENST00000539097 AMDHD1Q96NU7 426 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms