RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 A3GALT2U3KPV4 340 aa18.77■□□□□ 0.59
VPS28-209ENST00000528142 IGLV3-32A0A0A0MS00 114 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 DAPL1A0PJW8 107 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 SLC25A12O75746 678 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 HIST1H2ABP04908 130 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 MRPL3P09001 348 aaKnown RBP18.76■□□□□ 0.59
VPS28-209ENST00000528142 CDKN2AP42771 156 aaKnown RBP18.76■□□□□ 0.59
VPS28-209ENST00000528142 RPS25P62851 125 aaKnown RBP18.76■□□□□ 0.59
VPS28-209ENST00000528142 GGTLC2Q14390 218 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 CSRP2Q16527 193 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 ZNF404Q494X3 552 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 TMPRSS11AQ6ZMR5 421 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 HIST3H2AQ7L7L0 130 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 OR10H4Q8NGA5 316 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 OR11G2Q8NGC1 345 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 MCFD2Q8NI22 146 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 STK35Q8TDR2 534 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 ZNRF4Q8WWF5 429 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 SMPDL3BQ92485 455 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 HIST1H2ACQ93077 130 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 TBX5Q99593 518 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 NPAS1Q99742 590 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 DDA1Q9BW61 102 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 SPRY4Q9C004 299 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 MMP27Q9H306 513 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 TMEM9BQ9NQ34 198 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 SSR3Q9UNL2 185 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 CORINQ9Y5Q5 1042 aa18.76■□□□□ 0.59
VPS28-209ENST00000528142 EP300Q09472 2414 aaPredicted RBP18.76■□□□□ 0.59
VPS28-209ENST00000528142 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 ETV2O00321 342 aaPredicted RBP18.75■□□□□ 0.59
VPS28-209ENST00000528142 AKAP8O43823 692 aaKnown RBP18.75■□□□□ 0.59
VPS28-209ENST00000528142 DLGAP3O95886 979 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 F13BP05160 661 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 CD63P08962 238 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 SDHAP31040 664 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 DIO1P49895 249 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 BDH1Q02338 343 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 FAM69AQ5T7M9 428 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 C1orf140Q5VVS0 124 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 C6orf15Q6UXA7 325 aaPredicted RBP18.75■□□□□ 0.59
VPS28-209ENST00000528142 TIPARPQ7Z3E1 657 aaKnown RBP18.75■□□□□ 0.59
VPS28-209ENST00000528142 CROCCP3Q8IVE0 287 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 ZFP41Q8N8Y5 198 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 TMEM203Q969S6 136 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 LIN37Q96GY3 246 aaPredicted RBP18.75■□□□□ 0.59
VPS28-209ENST00000528142 ASPNQ9BXN1 380 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 ASB6Q9NWX5 421 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 TAS2R5Q9NYW4 299 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 KLRF1Q9NZS2 232 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 PISDQ9UG56 409 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 YARS2Q9Y2Z4 477 aaKnown RBP18.75■□□□□ 0.59
VPS28-209ENST00000528142 EXPH5Q8NEV8 1989 aa18.75■□□□□ 0.59
VPS28-209ENST00000528142 PNMA8CA0A1B0GUJ8 204 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 ZNF670-ZNF695F2Z2N8 137 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 LRRTM2O43300 516 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 SPI1P17947 270 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 MSX1P28360 303 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 GABRA5P31644 462 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 NBL1P41271 181 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 ZNF85Q03923 595 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 IL10RAQ13651 578 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 EMC4Q5J8M3 183 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 SLC35D3Q5M8T2 416 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 CD200R1LQ6Q8B3 271 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 ARSKQ6UWY0 536 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 MAMDC2Q7Z304 686 aaPredicted RBP18.74■□□□□ 0.59
VPS28-209ENST00000528142 ZMYND19Q96E35 227 aaPredicted RBP18.74■□□□□ 0.59
VPS28-209ENST00000528142 TXNL4BQ9NX01 149 aaKnown RBP18.74■□□□□ 0.59
VPS28-209ENST00000528142 BABAM2Q9NXR7 383 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 CLDN25C9JDP6 229 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 ITGA10O75578 1167 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 IGHEP01854 428 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 CASP3P42574 277 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 LGALS3BPQ08380 585 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 PON3Q15166 354 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 C5orf46Q6UWT4 87 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 NDUFAF7Q7L592 441 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 KLBQ86Z14 1044 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 EXD3Q8N9H8 876 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 LSM14AQ8ND56 463 aaKnown RBP18.74■□□□□ 0.59
VPS28-209ENST00000528142 OR51L1Q8NGJ5 315 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 SMAP2Q8WU79 429 aaPredicted RBP18.74■□□□□ 0.59
VPS28-209ENST00000528142 TSPAN32Q96QS1 320 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 OR11A1Q9GZK7 315 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 NDEL1Q9GZM8 345 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 OCEL1Q9H607 264 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 SIAEQ9HAT2 523 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 SDHAF3Q9NRP4 125 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 PPP4R1LQ9P1A2 415 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 WIF1Q9Y5W5 379 aa18.74■□□□□ 0.59
VPS28-209ENST00000528142 A0A1W2PNU3 283 aaPredicted RBP18.73■□□□□ 0.59
VPS28-209ENST00000528142 A0A1W2PQL4 384 aaPredicted RBP18.73■□□□□ 0.59
VPS28-209ENST00000528142 TFP02787 698 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 IDUAP35475 653 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 APOBEC1P41238 236 aaKnown RBP18.73■□□□□ 0.59
VPS28-209ENST00000528142 SLC25A1P53007 311 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 ACTC1P68032 377 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 ACTA1P68133 377 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 SGCBQ16585 318 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 196.6 ms