RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ARHGAP23Q9P227 1491 aa2.43□□□□□ -2.02
VPS41-207ENST00000439468 MAST1Q9Y2H9 1570 aa2.43□□□□□ -2.02
VPS41-207ENST00000439468 NPHP4O75161 1426 aaPredicted RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 UGGT2Q9NYU1 1516 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 CROCC2H7BZ55 1655 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 RALGAPBQ86X10 1494 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.42□□□□□ -2.02
VPS41-207ENST00000439468 KIR2DL5BA0A0G2JN68 375 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 KIR2DL5BA0A0G2JPC4 375 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 A0A1B0GVL5 298 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 TCRBV9S1A1TA0A576 114 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 CLRN2A0PK11 232 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 USP27XA6NNY8 438 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 IDSB3KWA1 339 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 MPHOSPH10O00566 681 aaKnown RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 NBR2O15453 112 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 EMC8O43402 210 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 RAMP3O60896 148 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 AP2A1O95782 977 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 ACTL6AO96019 429 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 LGALS2P05162 132 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 CAPN1P07384 714 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 GNA11P29992 359 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 YWHABP31946 246 aaKnown RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 DRD3P35462 400 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 RPL13AP40429 203 aaKnown RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 MAP3K8P41279 467 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 KLK7P49862 253 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 EFNB2P52799 333 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 ATP1B3P54709 279 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 TNFRSF17Q02223 184 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 IL17AQ16552 155 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 EXOC3L2Q2M3D2 409 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 SFT2D3Q587I9 215 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 CARD16Q5EG05 197 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 KLF17Q5JT82 389 aaPredicted RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 C1orf220Q5T0J3 134 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 WDR74Q6RFH5 385 aaPredicted RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 VRK2Q86Y07 508 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 ECHDC2Q86YB7 292 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 PRR22Q8IZ63 422 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 KIR2DL5AQ8N109 375 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 OR2AP1Q8NGE2 309 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 KIR2DL5BQ8NHK3 375 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 LINC01006Q8NI28 216 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 ANKRD49Q8WVL7 239 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 OR1E3Q8WZA6 343 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 FRAT1Q92837 279 aaPredicted RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 EFHD2Q96C19 240 aaPredicted RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 CMTM7Q96FZ5 175 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 SLC41A3Q96GZ6 507 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 COQ2Q96H96 371 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 CYYR1Q96J86 154 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 OXGR1Q96P68 337 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 ARHGDIGQ99819 225 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 NAT9Q9BTE0 207 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 YY1AP1Q9H869 796 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 THUMPD1Q9NXG2 353 aaKnown RBP2.42□□□□□ -2.02
VPS41-207ENST00000439468 ADAM28Q9UKQ2 775 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 ATP7AQ04656 1500 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 KDM5DQ9BY66 1539 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 ATRNO75882 1429 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 CNTLNQ9NXG0 1405 aa2.42□□□□□ -2.02
VPS41-207ENST00000439468 KIDINS220Q9ULH0 1771 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 NSG1A0A0A6YYJ2 146 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 POLR2DO15514 142 aaKnown RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 ZNF780AO75290 641 aaPredicted RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 MMP23AO75900 390 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 OXSR1O95747 527 aaPredicted RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 POU2F1P14859 743 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 ELK1P19419 428 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 COX5AP20674 150 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 CXCR2P25025 360 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 CD1BP29016 333 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 CALCRP30988 508 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 CCR1P32246 355 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 BTCP35070 178 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 CCT3P49368 545 aaKnown RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 DUSP3P51452 185 aaPredicted RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 PLK1P53350 603 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 PKNOX1P55347 436 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 MESDQ14696 234 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 OXA1LQ15070 435 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 PDK3Q15120 406 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 LRRC23Q53EV4 343 aaPredicted RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 PAGE3Q5JUK9 113 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 PGAP1Q75T13 922 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 NLRP9Q7RTR0 991 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 TMEM110Q86TL2 294 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 FTMTQ8N4E7 242 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 OR2L5Q8NG80 312 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 OR1L4Q8NGR5 311 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 ZNF606Q8WXB4 792 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 MRPS31Q92665 395 aaKnown RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 UBE2E3Q969T4 207 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 C10orf35Q96D05 121 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 TCEANC2Q96MN5 208 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 LINC00167Q96N53 147 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 SMIM14Q96QK8 99 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 EBF4Q9BQW3 602 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms