RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 SUOXP51687 545 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 RPS25P62851 125 aaKnown RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 RASGEF1BQ0VAM2 473 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 MLC1Q15049 377 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 UBE2NLQ5JXB2 153 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ATAT1Q5SQI0 421 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 APOOLQ6UXV4 268 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 FAM110BQ8TC76 370 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 MCHR2Q969V1 340 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM106AQ96A25 262 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 PANX1Q96RD7 426 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 OSMRQ99650 979 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 MXRA8Q9BRK3 442 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 TRMT61BQ9BVS5 477 aaKnown RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SEMA6CQ9H3T2 930 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ALG9Q9H6U8 611 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 TRMT112Q9UI30 125 aaKnown RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 C2orf78A6NCI8 922 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SOCS7O14512 581 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 P2RX6O15547 441 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 YIF1AO95070 293 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 CYB5R3P00387 301 aaPredicted RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 AVPR2P30518 371 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 DIO3P55073 304 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 MEF2AQ02078 507 aaPredicted RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 PLA2G7Q13093 441 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 CLINT1Q14677 625 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 TAF13Q15543 124 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 NKG7Q16617 165 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SFRP5Q5T4F7 317 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 NCR3LG1Q68D85 454 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 PRR27Q6MZM9 219 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 C11orf87Q6NUJ2 197 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 C15orf39Q6ZRI6 1047 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SLC25A26Q70HW3 274 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 FBXO16Q8IX29 292 aaPredicted RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 RCBTB1Q8NDN9 531 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 NUBPLQ8TB37 319 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 RXFP2Q8WXD0 754 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 RGP1Q92546 391 aaPredicted RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ZFP3Q96NJ6 502 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 LYSMD1Q96S90 227 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SLC25A21Q9BQT8 299 aaPredicted RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 NELFAQ9H3P2 528 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ZDHHC4Q9NPG8 344 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 PCDHGC4Q9Y5F7 938 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 A0A1B0GW64 132 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 A6NLC8 198 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 C9orf172C9J069 976 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 HLA-GP17693 338 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SERPINA2P20848 420 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ACKR3P25106 362 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 MTNR1AP48039 350 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 UBE2V1Q13404 147 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 RBM39Q14498 530 aaKnown RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SLC9A3R2Q15599 337 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SMIM21Q3B7S5 101 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF667Q5HYK9 610 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 HECTD2Q5U5R9 776 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SFRP4Q6FHJ7 346 aaPredicted RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SERPINA13PQ6UXR4 307 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 KDM8Q8N371 416 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 OR5D16Q8NGK9 328 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 PCDH19Q8TAB3 1148 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 HPSE2Q8WWQ2 592 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ASB17Q8WXJ9 295 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 TM4SF18Q96CE8 201 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 S100A16Q96FQ6 103 aaKnown RBP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 PPP1R16AQ96I34 528 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 SCGB3A2Q96PL1 93 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 CNTNAP3Q9BZ76 1288 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 CSTL1Q9H114 145 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 ZBTB3Q9H5J0 574 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 TREX1Q9NSU2 369 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 RBM22Q9NW64 420 aaKnown RBP eCLIP3.85□□□□□ -1.79
NEDD4-201ENST00000338963 DNAJB11Q9UBS4 358 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 NDOR1Q9UHB4 597 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 NAGKQ9UJ70 344 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 MAP4K5Q9Y4K4 846 aa3.85□□□□□ -1.79
NEDD4-201ENST00000338963 N4BP2Q86UW6 1770 aaPredicted RBP3.84□□□□□ -1.79
NEDD4-201ENST00000338963 HSPB2A8KAH6 182 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 TRAPPC2LH3BP13 241 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 FOXE1O00358 373 aaPredicted RBP3.84□□□□□ -1.79
NEDD4-201ENST00000338963 DVL2O14641 736 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 MMP23AO75900 390 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 OR2J2O76002 312 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 CXCL14O95715 111 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 IGF2P01344 180 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 MT-ND4P03905 459 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 IRS1P35568 1242 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 SOX18P35713 384 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 SOX3P41225 446 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 RPS8P62241 208 aaKnown RBP3.84□□□□□ -1.79
NEDD4-201ENST00000338963 CRADDP78560 199 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 TLE2Q04725 743 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 SPOCK1Q08629 439 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 CHIT1Q13231 466 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 SLBPQ14493 270 aaKnown RBP eCLIP3.84□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF460Q14592 562 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 PTGES3Q15185 160 aaKnown RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms