RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TPRA1Q86W33 373 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ZNF440Q8IYI8 595 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ZNF527Q8NB42 609 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 LRFN5Q96NI6 719 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 NMNAT2Q9BZQ4 307 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 TPD52L2O43399 206 aaKnown RBP18.3■□□□□ 0.52
VPS53-201ENST00000291074 ICOSLGO75144 302 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 F13BP05160 661 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 EDNRAP25101 427 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 GRK6P43250 576 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 PPICP45877 212 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 NXPH1P58417 271 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 RPS11P62280 158 aaKnown RBP eCLIP18.3■□□□□ 0.52
VPS53-201ENST00000291074 CFHR1Q03591 330 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 LTBQ06643 244 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 TATDN3Q17R31 274 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 MZT2BQ6NZ67 158 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 MS4A15Q8N5U1 240 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 OR4D9Q8NGE8 314 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 TTYH2Q9BSA4 534 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 MOV10Q9HCE1 1003 aaKnown RBP18.3■□□□□ 0.52
VPS53-201ENST00000291074 TRBV2A0A0J9YWF9 115 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 ZNF264O43296 627 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 IDH3BO43837 385 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 DDAH2O95865 285 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 GALNSP34059 522 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 ZP2Q05996 745 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 VWA2Q5GFL6 755 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 GPR135Q8IZ08 494 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 SYS1Q8N2H4 156 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 ZNF511Q8NB15 262 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 OR1L3Q8NH93 324 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 KCTD12Q96CX2 325 aaKnown RBP18.3■□□□□ 0.52
VPS53-201ENST00000291074 NANSQ9NR45 359 aa18.3■□□□□ 0.52
VPS53-201ENST00000291074 A0A087WV48 116 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 SNRPBP14678 240 aaKnown RBP18.29■□□□□ 0.52
VPS53-201ENST00000291074 ATF1P18846 271 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 RORAP35398 523 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 TALDO1P37837 337 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 CD83Q01151 205 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 SF3A2Q15428 464 aaKnown RBP18.29■□□□□ 0.52
VPS53-201ENST00000291074 LINC01590Q5TEZ4 76 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 POMZP3Q6PJE2 187 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 OGFOD3Q6PK18 319 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 LSM14AQ8ND56 463 aaKnown RBP18.29■□□□□ 0.52
VPS53-201ENST00000291074 KTI12Q96EK9 354 aaPredicted RBP18.29■□□□□ 0.52
VPS53-201ENST00000291074 ZC3HAV1LQ96H79 300 aaKnown RBP18.29■□□□□ 0.52
VPS53-201ENST00000291074 SLC46A1Q96NT5 459 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 NUDT9Q9BW91 350 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 SLC19A3Q9BZV2 496 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 MMP25Q9NPA2 562 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 ALG5Q9Y673 324 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 H7C1C5 153 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 MAGEB1P43366 347 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 FOXL2P58012 376 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 PRPS1P60891 318 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 LCN6P62502 163 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 ZNF721Q8TF20 911 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 C17orf50Q8WW18 174 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 LCORQ96JN0 433 aaPredicted RBP18.29■□□□□ 0.52
VPS53-201ENST00000291074 ABHD1Q96SE0 405 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 EPHA6Q9UF33 1036 aa18.29■□□□□ 0.52
VPS53-201ENST00000291074 ARID1BQ8NFD5 2236 aaPredicted RBP18.29■□□□□ 0.52
VPS53-201ENST00000291074 IGKV3D-11A0A0A0MRZ8 115 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.28■□□□□ 0.52
VPS53-201ENST00000291074 IGKV3-11P04433 115 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 PNMTP11086 282 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 NPR2P20594 1047 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 ARL4DP49703 201 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 AGFG1P52594 562 aaKnown RBP18.28■□□□□ 0.52
VPS53-201ENST00000291074 CTXN1P60606 82 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 BCL2A1Q16548 175 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 RNASE12Q5GAN4 147 aaKnown RBP18.28■□□□□ 0.52
VPS53-201ENST00000291074 C1orf189Q5VU69 101 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 DUSP18Q8NEJ0 188 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 ZNF563Q8TA94 476 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 ADIPOR1Q96A54 375 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 GPX7Q96SL4 187 aaPredicted RBP18.28■□□□□ 0.52
VPS53-201ENST00000291074 ALG12Q9BV10 488 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 HIF3AQ9Y2N7 669 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 BOLA1Q9Y3E2 137 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 EEF1E1O43324 174 aaKnown RBP18.28■□□□□ 0.52
VPS53-201ENST00000291074 PIAS2O75928 621 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 WISP1O95388 367 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 TACR3P29371 465 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 ADH7P40394 386 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 RAB25P57735 213 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 ALG10Q5BKT4 473 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 FAM122BQ7Z309 247 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 LRRC75AQ8NAA5 344 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 TRIM63Q969Q1 353 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 LPAR4Q99677 370 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 THAP7Q9BT49 309 aaPredicted RBP18.28■□□□□ 0.52
VPS53-201ENST00000291074 AK6Q9Y3D8 172 aaKnown RBP18.28■□□□□ 0.52
VPS53-201ENST00000291074 MMACHCQ9Y4U1 282 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 WDR87Q6ZQQ6 2873 aa18.28■□□□□ 0.52
VPS53-201ENST00000291074 IGHV1OR21-1A0A087WYE8 117 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 DCTN6O00399 190 aa18.27■□□□□ 0.52
VPS53-201ENST00000291074 NDUFB5O43674 189 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms