RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CLDN5O00501 218 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 CA1P00915 261 aaPredicted RBP1.1□□□□□ -2.23
SCN1A-208ENST00000625916 LGALS2P05162 132 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 CISD3P0C7P0 127 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 HPGDP15428 266 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ABOP16442 354 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 PGCP20142 388 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 CALCRP30988 508 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 RFC4P35249 363 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ADRA1AP35348 466 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 CXCL5P42830 114 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ASMTP46597 345 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ARRB1P49407 418 aaPredicted RBP1.1□□□□□ -2.23
SCN1A-208ENST00000625916 HSPA2P54652 639 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 HSD17B7P56937 341 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 EWSR1Q01844 656 aaKnown RBP eCLIP1.1□□□□□ -2.23
SCN1A-208ENST00000625916 SMARCB1Q12824 385 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 GRB7Q14451 532 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ATP6AP1Q15904 470 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 RFX4Q33E94 735 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 KRTAP13-4Q3LI77 160 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 TMEM255AQ5JRV8 349 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 CTRB2Q6GPI1 263 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF880Q6PDB4 577 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 Q6ZN92 141 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF620Q6ZNG0 422 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 RBM43Q6ZSC3 357 aaKnown RBP1.1□□□□□ -2.23
SCN1A-208ENST00000625916 CATSPER4Q7RTX7 472 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 PAQR7Q86WK9 346 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 SNX32Q86XE0 403 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 DHRSXQ8N5I4 330 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF713Q8N859 430 aaPredicted RBP1.1□□□□□ -2.23
SCN1A-208ENST00000625916 Q8N976 141 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 OR10A7Q8NGE5 316 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 OR10G9Q8NGN4 311 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 OR52P1PQ8NH57 321 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 MGARPQ8TDB4 240 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 ASB9Q96DX5 294 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 SEC22AQ96IW7 307 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 BMFQ96LC9 184 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 C12orf66Q96MD2 445 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 SPXQ9BT56 116 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 NDFIP1Q9BT67 221 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 FICDQ9BVA6 458 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 C20orf85Q9H1P6 137 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 RHBGQ9H310 441 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 SUDS3Q9H7L9 328 aaPredicted RBP1.1□□□□□ -2.23
SCN1A-208ENST00000625916 CCL28Q9NRJ3 127 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 OR12D3Q9UGF7 316 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 TBK1Q9UHD2 729 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 PCYOX1Q9UHG3 505 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 GGA2Q9UJY4 613 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 KNSTRNQ9Y448 316 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 SLC25A15Q9Y619 301 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 NCAPD2Q15021 1401 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 RNF103-CHMP3A0A140T963 221 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 C7orf66A4D0T2 115 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 GSAPA4D1B5 854 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TRIM64A6NGJ6 449 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TRIM64BA6NI03 449 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 G3V4G9 280 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 DCTN6O00399 190 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 RS1O15537 224 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 UGT1A9O60656 530 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TPST2O60704 377 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 ENTPD5O75356 428 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 SUPT3HO75486 399 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 LRATO95237 230 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TRIM16O95361 564 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 ADCY5O95622 1261 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 KLK3P07288 261 aaPredicted RBP1.09□□□□□ -2.23
SCN1A-208ENST00000625916 H2BFMP0C1H6 154 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 POLR2EP19388 210 aaKnown RBP1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TNNI3P19429 210 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 FUT1P19526 365 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TPSB2P20231 275 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TBXA2RP21731 343 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 DNAJB1P25685 340 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 UBE2AP49459 152 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 AP3M2P53677 418 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 ENPEPQ07075 957 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 SNTB2Q13425 540 aaKnown RBP1.09□□□□□ -2.23
SCN1A-208ENST00000625916 TPSAB1Q15661 275 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 CEBPEQ15744 281 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 RSPO1Q2MKA7 263 aaPredicted RBP1.09□□□□□ -2.23
SCN1A-208ENST00000625916 PARP15Q460N3 678 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 SAMD4BQ5PRF9 694 aaKnown RBP1.09□□□□□ -2.23
SCN1A-208ENST00000625916 C19orf35Q6ZS72 473 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 PRSS41Q7RTY9 318 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 KIAA1328Q86T90 577 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 ACOT1Q86TX2 421 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 DENND6BQ8NEG7 585 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 OR5L2Q8NGL0 311 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 HTR3CQ8WXA8 447 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 FGF11Q92914 225 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 PAGE5Q96GU1 130 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 B9D1Q9UPM9 204 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 GSTK1Q9Y2Q3 226 aa1.09□□□□□ -2.23
SCN1A-208ENST00000625916 NUP214P35658 2090 aaPredicted RBP1.08□□□□□ -2.24
SCN1A-208ENST00000625916 A0A1W2PNV4 684 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms