RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 TRIQKQ629K1 86 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 LHFPL3Q86UP9 236 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 CMIPQ8IY22 773 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 OR6T1Q8NGN1 323 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 YIPF3Q9GZM5 350 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 RAB33BQ9H082 229 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 TRIM36Q9NQ86 728 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 PNPLA3Q9NST1 481 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 ARMC1Q9NVT9 282 aa8.31□□□□□ -1.08
HDAC9-229ENST00000622668 VSX1Q9NZR4 365 aaPredicted RBP8.31□□□□□ -1.08
HDAC9-229ENST00000622668 TEX13CA0A0J9YWL9 993 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CENPXA8MT69 81 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CENPBD1B2RD01 187 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ACP2P11117 423 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CRISP1P54107 249 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 EIF2B1Q14232 305 aaKnown RBP8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ADRM1Q16186 407 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 RNASE12Q5GAN4 147 aaKnown RBP8.3□□□□□ -1.08
HDAC9-229ENST00000622668 RBM48Q5RL73 367 aaKnown RBP8.3□□□□□ -1.08
HDAC9-229ENST00000622668 BTLAQ7Z6A9 289 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CPOQ8IVL8 374 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 SLC15A4Q8N697 577 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CCDC54Q8NEL0 328 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 DNAAF1Q8NEP3 725 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 TSPAN14Q8NG11 270 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 C11orf40Q8WZ69 217 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ST8SIA1Q92185 356 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 UFD1Q92890 307 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 TMEM41AQ96HV5 264 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CHCHD6Q9BRQ6 235 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 C1orf21Q9H246 121 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 MSRB2Q9Y3D2 182 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 MTRF1O75570 445 aaKnown RBP8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CCL3P10147 92 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 NAGAP17050 411 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 RGS6P49758 472 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 TSPAN5P62079 268 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 RIPK1Q13546 671 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 PDK3Q15120 406 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 GPR139Q6DWJ6 353 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 MZT2AQ6P582 158 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 POGLUT1Q8NBL1 392 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 MRGPRX4Q96LA9 322 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 TNFRSF13CQ96RJ3 184 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 C1QTNF3Q9BXJ4 246 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 BAIAP2Q9UQB8 552 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 DOCK9Q9BZ29 2069 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ZNF646O15015 1829 aaPredicted RBP8.3□□□□□ -1.08
HDAC9-229ENST00000622668 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.3□□□□□ -1.08
HDAC9-229ENST00000622668 OR6C70A6NIJ9 312 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 SURF4O15260 269 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ADAP00813 363 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ATP1B1P05026 303 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ZNF35P13682 527 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 DEFA1P59665 94 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 DEFA3P59666 94 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 PMPCAQ10713 525 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 COX10Q12887 443 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 APOFQ13790 326 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ANKDD1AQ495B1 522 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 PODNL1Q6PEZ8 512 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ZNF836Q6ZNA1 936 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 SHFQ7M4L6 423 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ERMP1Q7Z2K6 904 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ZBTB46Q86UZ6 589 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 RETREG3Q86VR2 466 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 FAM109AQ8N4B1 249 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 OR5J2Q8NH18 312 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 SLC39A7Q92504 469 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 CPNE4Q96A23 557 aaPredicted RBP8.3□□□□□ -1.08
HDAC9-229ENST00000622668 NODALQ96S42 347 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 PKP2Q99959 881 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 PILRAQ9UKJ1 303 aa8.3□□□□□ -1.08
HDAC9-229ENST00000622668 ARID2Q68CP9 1835 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 FAM183AA6NL82 134 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 IFNGR1P15260 489 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 PRKAR1BP31321 381 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 FZD5Q13467 585 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 SPATS1Q496A3 300 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 SPANXN2Q5MJ10 180 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 MRGPRGQ86SM5 289 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 BHLHE23Q8NDY6 225 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 ALKBH3Q96Q83 286 aaPredicted RBP8.29□□□□□ -1.08
HDAC9-229ENST00000622668 CNN2Q99439 309 aaKnown RBP8.29□□□□□ -1.08
HDAC9-229ENST00000622668 CPPED1Q9BRF8 314 aaPredicted RBP8.29□□□□□ -1.08
HDAC9-229ENST00000622668 KAT8Q9H7Z6 458 aaKnown RBP8.29□□□□□ -1.08
HDAC9-229ENST00000622668 PCDHB16Q9NRJ7 776 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 TUBA8Q9NY65 449 aaPredicted RBP8.29□□□□□ -1.08
HDAC9-229ENST00000622668 ERRFI1Q9UJM3 462 aaPredicted RBP8.29□□□□□ -1.08
HDAC9-229ENST00000622668 FNDC1Q4ZHG4 1894 aaPredicted RBP8.29□□□□□ -1.08
HDAC9-229ENST00000622668 MED13LQ71F56 2210 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 A0A087WZY1 265 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 A0A1W2PRQ8 180 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 TUBAL3A6NHL2 446 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 J3KTA2 159 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 RAB40ALP0C0E4 278 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 GM2AP17900 193 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 THBS2P35442 1172 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 RAD52P43351 418 aa8.29□□□□□ -1.08
HDAC9-229ENST00000622668 RAB39AQ14964 217 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms