RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TBC1D15Q8TC07 691 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 APOBEC4Q8WW27 367 aaKnown RBP14.36□□□□□ -0.11
CPSF1-213ENST00000620219 C3orf49Q96BT1 292 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 LAMP5Q9UJQ1 280 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 CHST2Q9Y4C5 530 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 GMEB1Q9Y692 573 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 FRYLO94915 3013 aa14.36□□□□□ -0.11
CPSF1-213ENST00000620219 MAGEB4O15481 346 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 RANBP1P43487 201 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 GABRA4P48169 554 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 P2RX1P51575 399 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 LCN10Q6JVE6 187 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 WDR88Q6ZMY6 472 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 KTI12Q96EK9 354 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 OSGIN1Q9UJX0 560 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 DLGAP3O95886 979 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 RPS27P42677 84 aaKnown RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 RAB15P59190 212 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 EEF1A1P5Q5VTE0 462 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 C1QL3Q5VWW1 255 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 CLEC1AQ8NC01 280 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 PLPP5Q8NEB5 264 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 SPRYD4Q8WW59 207 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 ALG8Q9BVK2 526 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 TRIM36Q9NQ86 728 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 MYOTQ9UBF9 498 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 A0A1W2PNR3 127 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 LIMS1P48059 325 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 EMP3P54852 163 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 BPHLQ86WA6 291 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 MAML2Q8IZL2 1156 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 OR8K3Q8NH51 312 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 HIST1H1CP16403 213 aaKnown RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 MYL9P24844 172 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 ETV5P41161 510 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 ETV1P50549 477 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 GBX2P52951 348 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 APOOLQ6UXV4 268 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 USP43Q70EL4 1123 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 MEPCEQ7L2J0 689 aaKnown RBP14.35□□□□□ -0.11
CPSF1-213ENST00000620219 LNX2Q8N448 690 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 OR52I1Q8NGK6 324 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 ENKD1Q9H0I2 346 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 PCDHGB7Q9Y5F8 929 aa14.35□□□□□ -0.11
CPSF1-213ENST00000620219 TNRC18O15417 2968 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-213ENST00000620219 MT-ND5P03915 603 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 PSMB10P40306 273 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SOX2P48431 317 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 POLR2HP52434 150 aaKnown RBP14.34□□□□□ -0.11
CPSF1-213ENST00000620219 WNT4P56705 351 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 KRR1Q13601 381 aaKnown RBP14.34□□□□□ -0.11
CPSF1-213ENST00000620219 CTF1Q16619 201 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF404Q494X3 552 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SLC22A10Q63ZE4 541 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 B3GNTL1Q67FW5 361 aaPredicted RBP14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SLC16A12Q6ZSM3 486 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 PMM1Q92871 262 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 TAAR9Q96RI9 348 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SYT4Q9H2B2 425 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SULT2B1O00204 365 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 RAD1O60671 282 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 RAB43Q86YS6 212 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 PHF21AQ96BD5 680 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 DDIT4LQ96D03 193 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 GAL3ST1Q99999 423 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SEMA4CQ9C0C4 833 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SLC22A11Q9NSA0 550 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 CNOT2Q9NZN8 540 aaKnown RBP14.34□□□□□ -0.11
CPSF1-213ENST00000620219 FBXL4Q9UKA2 621 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SLC6A5Q9Y345 797 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 DENND4AQ7Z401 1863 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 A0A1W2PPL8 197 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 M0R082 166 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 OR2T1O43869 369 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 SLC16A7O60669 478 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 TBXA2RP21731 343 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 DPP4P27487 766 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF676Q8N7Q3 588 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 DTX3Q8N9I9 347 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 POGLUT1Q8NBL1 392 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 HTRA1Q92743 480 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 ZC3H10Q96K80 434 aaKnown RBP14.34□□□□□ -0.11
CPSF1-213ENST00000620219 KCTD7Q96MP8 289 aa14.34□□□□□ -0.11
CPSF1-213ENST00000620219 CNN2Q99439 309 aaKnown RBP14.34□□□□□ -0.11
CPSF1-213ENST00000620219 DNAJC13O75165 2243 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF701M0R085 212 aaPredicted RBP14.33□□□□□ -0.11
CPSF1-213ENST00000620219 GABARAPO95166 117 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 KRT8P05787 483 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 RAB40BQ12829 278 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 ZNF141Q15928 474 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 UBE2J2Q8N2K1 259 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 SFXN2Q96NB2 322 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 RBP7Q96R05 134 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 EMC6Q9BV81 110 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 LAT2Q9GZY6 243 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 LDAHQ9H6V9 325 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 MEPEQ9NQ76 525 aaPredicted RBP14.33□□□□□ -0.11
CPSF1-213ENST00000620219 INIPQ9NRY2 104 aa14.33□□□□□ -0.11
CPSF1-213ENST00000620219 OR6C76A6NM76 312 aa14.33□□□□□ -0.12
CPSF1-213ENST00000620219 OR7A10O76100 309 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms