RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 MRPL33O75394 65 aaKnown RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 AHSA1O95433 338 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 CNOT4O95628 575 aaKnown RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 AQP1P29972 269 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 ACAA2P42765 397 aaKnown RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 RGS8P57771 180 aaPredicted RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 MTPNP58546 118 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 GUCY1A3Q02108 690 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 ITGADQ13349 1161 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 CEACAM7Q14002 265 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 CAPRIN1Q14444 709 aaKnown RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 OR7A5Q15622 319 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 STK11Q15831 433 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 OTUD3Q5T2D3 398 aaPredicted RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 INTS11Q5TA45 600 aaKnown RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 DHRS4L2Q6PKH6 230 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 CASP12Q6UXS9 341 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 Q6ZT83 130 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 BHLHA15Q7RTS1 189 aaPredicted RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 SSX8Q7RTT4 187 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 SERPINA11Q86U17 422 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 RANBP3LQ86VV4 465 aaPredicted RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 ARMC8Q8IUR7 673 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 GABRG1Q8N1C3 465 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 OR52E4Q8NGH9 312 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 HSD17B8Q92506 261 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 S100PBPQ96BU1 408 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 ANKRD27Q96NW4 1050 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 CPPED1Q9BRF8 314 aaPredicted RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 TRIM2Q9C040 744 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 ADAM19Q9H013 955 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 ZNF385DQ9H6B1 395 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 UBTD1Q9HAC8 227 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 C12orf10Q9HB07 376 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 TMEM27Q9HBJ8 222 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 SLC52A3Q9NQ40 469 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 ZNF446Q9NWS9 450 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 UPB1Q9UBR1 384 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 TESQ9UGI8 421 aaKnown RBP7.18□□□□□ -1.26
VPS53-214ENST00000572607 PRSS50Q9UI38 385 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 AKAP6Q13023 2319 aa7.18□□□□□ -1.26
VPS53-214ENST00000572607 NUP214P35658 2090 aaPredicted RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 CIB4A0PJX0 185 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ZC3H12DA2A288 527 aaKnown RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 LIPT2A6NK58 231 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 CCT8L1PA6NM43 557 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ZNF716A6NP11 495 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ATP8B1O43520 1251 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 OR2T1O43869 369 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 GCM2O75603 506 aaPredicted RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 LYZL6O75951 148 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 VAMP5O95183 116 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ATE1O95260 518 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 PNMTP11086 282 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 IMPDH2P12268 514 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 PRG2P13727 222 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 KLK2P20151 261 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 HOXC12P31275 282 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 SLC16A1P53985 500 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 HOXC5Q00444 222 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 SF3A3Q12874 501 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS53-214ENST00000572607 DEFB113Q30KQ7 82 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 TRMT5Q32P41 509 aaKnown RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 COQ5Q5HYK3 327 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ALG10BQ5I7T1 473 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 C1orf140Q5VVS0 124 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 FBXW9Q5XUX1 488 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 TMEM225Q6GV28 225 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 PAQR6Q6TCH4 344 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 C5orf46Q6UWT4 87 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 DLEU7Q6UYE1 221 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 C20orf204Q6ZNR8 217 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 PATL1Q86TB9 770 aaKnown RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 ATG4DQ86TL0 474 aaPredicted RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 GPAT4Q86UL3 456 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 CCDC103Q8IW40 242 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 PCYOX1LQ8NBM8 494 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 STK35Q8TDR2 534 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 SLC26A7Q8TE54 656 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 DNAJA4Q8WW22 397 aaPredicted RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 RASSF5Q8WWW0 418 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 PIGTQ969N2 578 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 C3orf49Q96BT1 292 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 MBD6Q96DN6 1003 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 MUCL1Q96DR8 90 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 SLC47A1Q96FL8 570 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 PLPPR2Q96GM1 343 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ALPK1Q96QP1 1244 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 CCL19Q99731 98 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 SF3B5Q9BWJ5 86 aaKnown RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 KRTAP9-2Q9BYQ4 174 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 LIME1Q9H400 295 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 IKZF5Q9H5V7 419 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 CCDC134Q9H6E4 229 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ESRP2Q9H6T0 727 aaKnown RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 PLEKHF2Q9H8W4 249 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 TPSG1Q9NRR2 321 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 BEX4Q9NWD9 120 aaPredicted RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms