RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TRAM2Q15035 370 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 FAM69AQ5T7M9 428 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 C1orf146Q5VVC0 180 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 TTC33Q6PID6 262 aaPredicted RBP19.44■□□□□ 0.7
SNX1-210ENST00000560260 C5orf46Q6UWT4 87 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 LIX1LQ8IVB5 337 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 MFSD8Q8NHS3 518 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 TMEM239Q8WW34 195 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 ITLN2Q8WWU7 325 aaPredicted RBP19.44■□□□□ 0.7
SNX1-210ENST00000560260 SLCO4A1Q96BD0 722 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 INTS12Q96CB8 462 aaKnown RBP19.44■□□□□ 0.7
SNX1-210ENST00000560260 MOGAT1Q96PD6 335 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 FUZQ9BT04 418 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 C20orf141Q9NUB4 165 aa19.44■□□□□ 0.7
SNX1-210ENST00000560260 FASNP49327 2511 aaKnown RBP19.44■□□□□ 0.7
SNX1-210ENST00000560260 PCNX1Q96RV3 2341 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 CYTIPO60759 359 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 AKR7A3O95154 331 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 IL2RAP01589 272 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 GPIP06744 558 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 H1F0P07305 194 aaKnown RBP19.43■□□□□ 0.7
SNX1-210ENST00000560260 TMIGD3P0DMS9 266 aaPredicted RBP19.43■□□□□ 0.7
SNX1-210ENST00000560260 FCGR2AP12318 317 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 ITGA2P17301 1181 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 SLC35A1P78382 337 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 SPIBQ01892 262 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 CHRNB3Q05901 458 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 ZSCAN26Q16670 478 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 FAM98BQ52LJ0 330 aaKnown RBP19.43■□□□□ 0.7
SNX1-210ENST00000560260 SLC46A3Q7Z3Q1 461 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 CCDC103Q8IW40 242 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 FAM26EQ8N5C1 309 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 TMEM99Q8N816 258 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 SLC25A36Q96CQ1 311 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 EPYCQ99645 322 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 TAPBPLQ9BX59 468 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 PRRG4Q9BZD6 226 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 SLC19A3Q9BZV2 496 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 KLHL13Q9P2N7 655 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 AURKCQ9UQB9 309 aa19.43■□□□□ 0.7
SNX1-210ENST00000560260 FAM32AQ9Y421 112 aaKnown RBP19.43■□□□□ 0.7
SNX1-210ENST00000560260 A0A087WUU8 490 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 TRBV4-1A0A0J9YWV2 114 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 WIPF3A6NGB9 483 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 ENO4A6NNW6 628 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 RAP2AP10114 183 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 GRPRP30550 384 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 MTFR2Q6P444 385 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 TBPL2Q6SJ96 375 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 PAQR6Q6TCH4 344 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 OR6S1Q8NH40 331 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 SLC7A13Q8TCU3 470 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 SDCCAG3Q96C92 435 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 PSD2Q9BQI7 771 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 VNN3Q9NY84 501 aa19.42■□□□□ 0.7
SNX1-210ENST00000560260 A0A1W2PNV4 684 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 A0A1W2PRQ8 180 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 ZNF716A6NP11 495 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 M0R082 166 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 SS18L1O75177 396 aaPredicted RBP19.41■□□□□ 0.7
SNX1-210ENST00000560260 TNFSF13O75888 250 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 RRM2P31350 389 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 IFNA8P32881 189 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 PER3P56645 1201 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 DGCR6Q14129 220 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 SEC23BQ15437 767 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 ZNF74Q16587 644 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 OTUD3Q5T2D3 398 aaPredicted RBP19.41■□□□□ 0.7
SNX1-210ENST00000560260 PODNL1Q6PEZ8 512 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 MEX3DQ86XN8 651 aaKnown RBP19.41■□□□□ 0.7
SNX1-210ENST00000560260 RELL2Q8NC24 303 aaPredicted RBP19.41■□□□□ 0.7
SNX1-210ENST00000560260 ZNF417Q8TAU3 575 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 ACOT11Q8WXI4 607 aaPredicted RBP19.41■□□□□ 0.7
SNX1-210ENST00000560260 ZHX1-C8orf76Q96EF9 292 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 ZNF587Q96SQ5 575 aaPredicted RBP19.41■□□□□ 0.7
SNX1-210ENST00000560260 CHID1Q9BWS9 393 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 ANKRD19PQ9H560 264 aa19.41■□□□□ 0.7
SNX1-210ENST00000560260 AQP7P3A6NL99 342 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 HSPB2A8KAH6 182 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 OR2T1O43869 369 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 CIB2O75838 187 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 CH25HO95992 272 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 UMPSP11172 480 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 KIR2DL2P43627 348 aaPredicted RBP19.4■□□□□ 0.7
SNX1-210ENST00000560260 SIRPAP78324 504 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 HSPB2Q16082 182 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 FGD3Q5JSP0 725 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 OR2A2Q6IF42 318 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 VWA1Q6PCB0 445 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 MRGPRGQ86SM5 289 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 NRMQ8IXM6 262 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 OR52J3Q8NH60 311 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 POP5Q969H6 163 aaKnown RBP19.4■□□□□ 0.7
SNX1-210ENST00000560260 RSRC1Q96IZ7 334 aaKnown RBP19.4■□□□□ 0.7
SNX1-210ENST00000560260 HS6ST2Q96MM7 605 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 ZFP3Q96NJ6 502 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 MED31Q9Y3C7 131 aa19.4■□□□□ 0.7
SNX1-210ENST00000560260 INTS1Q8N201 2190 aaKnown RBP19.39■□□□□ 0.7
SNX1-210ENST00000560260 EIF1BO60739 113 aaKnown RBP19.39■□□□□ 0.69
SNX1-210ENST00000560260 FKBP6O75344 327 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms