RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 COMMD8Q9NX08 183 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 TAS2R1Q9NYW7 299 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 VPS54Q9P1Q0 977 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 ANKMY1Q9P2S6 941 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 MOSPD1Q9UJG1 213 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 PTBP2Q9UKA9 531 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 TFR2Q9UP52 801 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 PLA2G4CQ9UP65 541 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 ERGIC3Q9Y282 383 aa2.39□□□□□ -2.03
VPS13C-208ENST00000559119 TDRKHQ9Y2W6 561 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 NOSIPQ9Y314 301 aaKnown RBP2.39□□□□□ -2.03
VPS13C-208ENST00000559119 SLIT1O75093 1534 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 WNK3Q9BYP7 1800 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 C15orf38-AP3S2A0A0A6YYH1 394 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 FAM47DPA6NHR8 397 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 H3BSA7 217 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 K7EPI3 171 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 BET1O15155 118 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 RNF113AO15541 343 aaKnown RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 BUB1O43683 1085 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 FMO6PO60774 539 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 TBL1XO60907 577 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CDH16O75309 829 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF254O75437 659 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CRCPO75575 148 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 DEXIO95424 95 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 TTC4O95801 387 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CRYZL1O95825 349 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PNPP00491 289 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SEMG1P04279 462 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CHRNGP07510 517 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PLEKP08567 350 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 C4AP0C0L4 1744 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 C4BP0C0L5 1744 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 RGPD1P0DJD0 1748 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 THRAP10827 490 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 IL32P24001 234 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PTBP1P26599 531 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 FDFT1P37268 417 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 FRKP42685 505 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SLC1A1P43005 524 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 HADHBP55084 474 aaKnown RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 HERVK_113P61574 105 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 B2MP61769 119 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 GFPT1Q06210 699 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PPP2R5CQ13362 524 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SELPLGQ14242 412 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 ALX1Q15699 326 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SLC15A2Q16348 729 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 MAPK6Q16659 721 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 MEP1BQ16820 701 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 ZBED5Q49AG3 693 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SFT2D3Q587I9 215 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 TOR1AIP1Q5JTV8 583 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SLC10A5Q5PT55 438 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 MPP7Q5T2T1 576 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 METTL11BQ5VVY1 283 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CENPPQ6IPU0 288 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 UFSP1Q6NVU6 142 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 ATRAIDQ6UW56 229 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 C4orf22Q6V702 233 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 IDO2Q6ZQW0 420 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 LINC00696Q6ZRV3 163 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PEX26Q7Z412 305 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 TSEN54Q7Z6J9 526 aaKnown RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 ARPINQ7Z6K5 226 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 GLRX5Q86SX6 157 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 ADAMTSL2Q86TH1 951 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 NT5DC3Q86UY8 548 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 DDX60Q8IY21 1712 aaKnown RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 METTL13Q8N6R0 699 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SLC2A14Q8TDB8 520 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CORO2AQ92828 525 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 NEIL2Q969S2 332 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CCDC127Q96BQ5 260 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 CEP19Q96LK0 163 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PANX3Q96QZ0 392 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 FUNDC2Q9BWH2 189 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 TM2D1Q9BX74 207 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SHCBP1LQ9BZQ2 653 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 NAPBQ9H115 298 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 DDX18Q9NVP1 670 aaKnown RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 DNAJB9Q9UBS3 223 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 KCNN3Q9UGI6 736 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 FETUBQ9UGM5 382 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PRG3Q9Y2Y8 225 aaPredicted RBP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 AP4S1Q9Y587 144 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 MYH7BA7E2Y1 1941 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 MYH7P12883 1935 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SF3B1O75533 1304 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS13C-208ENST00000559119 SPEF2Q9C093 1822 aa2.38□□□□□ -2.03
VPS13C-208ENST00000559119 PARP4Q9UKK3 1724 aaKnown RBP2.37□□□□□ -2.03
VPS13C-208ENST00000559119 USP6P35125 1406 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 ADAMTS13Q76LX8 1427 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 ARHGEF35A5YM69 484 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 CCDC160A6NGH7 325 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 SMIM23A6NLE4 172 aa2.37□□□□□ -2.03
VPS13C-208ENST00000559119 EVPLLA8MZ36 301 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms