RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 PGGHGQ32M88 737 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 EXOSC6Q5RKV6 272 aaKnown RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 DCST2Q5T1A1 773 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 ZNF836Q6ZNA1 936 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 ZNF620Q6ZNG0 422 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 PLEKHG7Q6ZR37 379 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 RBM45Q8IUH3 476 aaKnown RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 OR2T33Q8NG76 320 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 OR7G2Q8NG99 324 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 OR9A4Q8NGU2 314 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 SLC9A6Q92581 669 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 KAT2AQ92830 837 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 CDS1Q92903 461 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 MVB12AQ96EY5 273 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 SLC41A3Q96GZ6 507 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 LRR1Q96L50 414 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 HS6ST2Q96MM7 605 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 ZNF582Q96NG8 517 aaPredicted RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 OPALINQ96PE5 141 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 CHCHD6Q9BRQ6 235 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 JAM3Q9BX67 310 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 C6orf62Q9GZU0 229 aaPredicted RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 NUAK2Q9H093 628 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 SAP130Q9H0E3 1048 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 TSPAN10Q9H1Z9 355 aaPredicted RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 SLC26A1Q9H2B4 701 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 RPH3AQ9Y2J0 694 aaPredicted RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 LSM2Q9Y333 95 aaKnown RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 MRPS2Q9Y399 296 aaKnown RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 CORINQ9Y5Q5 1042 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 PHF3Q92576 2039 aaKnown RBP10.14□□□□□ -0.79
SHMT2-216ENST00000554975 COL6A5A8TX70 2615 aa10.14□□□□□ -0.79
SHMT2-216ENST00000554975 SYNDIG1LA6NDD5 238 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 VSTM2BA6NLU5 285 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 CPSF4LA6NMK7 179 aaKnown RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 ZNF670-ZNF695F2Z2N8 137 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 M0R129 80 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 ADAM10O14672 748 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 FOXS1O43638 330 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 TLX2O43763 284 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 AKAP8O43823 692 aaKnown RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 EPPINO95925 133 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 IL1AP01583 271 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 CRYABP02511 175 aaKnown RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 TP53P04637 393 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 HEXBP07686 556 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 COX6A1P12074 109 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 RNH1P13489 461 aaKnown RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 IGFBP2P18065 325 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 MTNR1AP48039 350 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 CASP6P55212 293 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 CDH11P55287 796 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 MAT1AQ00266 395 aaKnown RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 RBPJQ06330 500 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 BIKQ13323 160 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 ANKDD1AQ495B1 522 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 TYW3Q6IPR3 259 aaKnown RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 ZNF613Q6PF04 617 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 C3P1Q6ZMU1 363 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 Q71RC1 249 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 VRK2Q86Y07 508 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 CDK20Q8IZL9 346 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 NANOGP1Q8N7R0 232 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 PSD4Q8NDX1 1056 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 AP3S1Q92572 193 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 UFD1Q92890 307 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 C16orf58Q96GQ5 468 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 ZNF559Q9BR84 538 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 EXOSC4Q9NPD3 245 aaKnown RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 ADAP2Q9NPF8 381 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 MKKSQ9NPJ1 570 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 NPDC1Q9NQX5 325 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-216ENST00000554975 ENAMQ9NRM1 1142 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 RHBDL2Q9NX52 303 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 IL20Q9NYY1 176 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 HCN3Q9P1Z3 774 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 GSTK1Q9Y2Q3 226 aa10.13□□□□□ -0.79
SHMT2-216ENST00000554975 IQCMA0A1B0GVH7 501 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 FUOMA2VDF0 154 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 HTR3EA5X5Y0 456 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 IDSB3KWA1 339 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 SGK494L7N484 410 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 PRKYO43930 277 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 OR10H2O60403 315 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 TPST2O60704 377 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 PRAMEF2O60811 474 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 NKX2-2O95096 273 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 RCBTB2O95199 551 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 APOA1P02647 267 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 TSPAN19P0C672 248 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 SLC35E2P0CK97 266 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 GALP22466 123 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 CFL1P23528 166 aaKnown RBP10.12□□□□□ -0.79
SHMT2-216ENST00000554975 RBM34P42696 430 aaKnown RBP10.12□□□□□ -0.79
SHMT2-216ENST00000554975 OMPP47874 163 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 EMP2P54851 167 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 EEF1A1P68104 462 aaKnown RBP10.12□□□□□ -0.79
SHMT2-216ENST00000554975 BDH1Q02338 343 aa10.12□□□□□ -0.79
SHMT2-216ENST00000554975 LTBQ06643 244 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms