RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	DEFB133	Q30KQ1	61 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	NKAIN2	Q5VXU1	208 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	MS4A15	Q8N5U1	240 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	ADAMTS14	Q8WXS8	1223 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	ZMYND19	Q96E35	227 aa	Predicted RBP	11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	TGM7	Q96PF1	710 aa		11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	MRPL15	Q9P015	296 aa	Known RBP	11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	AK6	Q9Y3D8	172 aa	Known RBP	11.49	□□□□□ -0.57
RNF4-222	ENST00000541204	VPS13A	Q96RL7	3174 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	LRRN3	E7EW58	273 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	GPR171	O14626	319 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	TNRC18	O15417	2968 aa	Predicted RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	PTP4A3	O75365	173 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	ENPP1	P22413	925 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	NUDT1	P36639	197 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	GFER	P55789	205 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	PITPNA	Q00169	270 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	SNTB2	Q13425	540 aa	Known RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	HAVCR2	Q8TDQ0	301 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	CNOT9	Q92600	299 aa	Known RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	CLIP3	Q96DZ5	547 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	RBM18	Q96H35	190 aa	Known RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	SLC38A3	Q99624	504 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	DPCD	Q9BVM2	203 aa	Predicted RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	TWSG1	Q9GZX9	223 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	LRRN3	Q9H3W5	708 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	NARFL	Q9H6Q4	476 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	SOHLH2	Q9NX45	425 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	NKIRAS2	Q9NYR9	191 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	IGHV1OR15-9	A0A0B4J2B8	117 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	TRABD2B	A6NFA1	517 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	FLRT2	O43155	660 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	SSNA1	O43805	119 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	TF	P02787	698 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	GDI2	P50395	445 aa	Known RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	BLK	P51451	505 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	RAB38	P57729	211 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF267	Q14586	743 aa	Predicted RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	POU4F3	Q15319	338 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	ZSWIM7	Q19AV6	140 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	LGALSL	Q3ZCW2	172 aa	Predicted RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	SLC38A6	Q8IZM9	456 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	TEX19	Q8NA77	164 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	SDR9C7	Q8NEX9	313 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	GCDH	Q92947	438 aa	Predicted RBP	11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	ORAI1	Q96D31	301 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	OR14A2	Q96R54	314 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	FOXQ1	Q9C009	403 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	CDCP1	Q9H5V8	836 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	GLTP	Q9NZD2	209 aa		11.48	□□□□□ -0.57
RNF4-222	ENST00000541204	TRAV1-2	A0A0B4J238	106 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	FAM221B	A6H8Z2	402 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	LINC00862	A6NCI5	91 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF593	O00488	134 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	MBTPS2	O43462	519 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ADAM11	O75078	769 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	TOX	O94900	526 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	NGFR	P08138	427 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ADRB1	P08588	477 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	PEPD	P12955	493 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	NAA10	P41227	235 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF81	P51508	661 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ACTC1	P68032	377 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ACTA1	P68133	377 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	CAMK2D	Q13557	499 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	KCNAB1	Q14722	419 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	NDUFAF6	Q330K2	333 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	SYT13	Q7L8C5	426 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	PIAS4	Q8N2W9	510 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	OR52E2	Q8NGJ4	325 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	RIT1	Q92963	219 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	MMAB	Q96EY8	250 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	PELI1	Q96FA3	418 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	SPACA7	Q96KW9	195 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	DUSP22	Q9NRW4	184 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	FLRT3	Q9NZU0	649 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ABRACL	Q9P1F3	81 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	COPZ2	Q9P299	210 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	COL4A2	P08572	1712 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	MEIKIN	A0A087WXM9	373 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	HPX	P02790	462 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	EMD	P50402	254 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	AP2S1	P53680	142 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	KLF9	Q13886	244 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	SFRP4	Q6FHJ7	346 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	OR4K13	Q8NH42	304 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ZNF671	Q8TAW3	534 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	LGALS14	Q8TCE9	139 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	SMIM19	Q96E16	107 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	ERMAP	Q96PL5	475 aa	Predicted RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	SORCS2	Q96PQ0	1159 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	DERL3	Q96Q80	235 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	DHRS9	Q9BPW9	319 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	PDCD1LG2	Q9BQ51	273 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	TMEM27	Q9HBJ8	222 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	MCCC2	Q9HCC0	563 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	DLL4	Q9NR61	685 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	HAO2	Q9NYQ3	351 aa		11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	EIF3K	Q9UBQ5	218 aa	Known RBP	11.47	□□□□□ -0.57
RNF4-222	ENST00000541204	FLVCR2	Q9UPI3	526 aa		11.47	□□□□□ -0.57

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