RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 B3GNTL1Q67FW5 361 aaPredicted RBP19.18■□□□□ 0.66
VPS28-212ENST00000530836 PCSK4Q6UW60 755 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 PRSS48Q7RTY5 328 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 C10orf53Q8N6V4 93 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 WDSUB1Q8N9V3 476 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 DTNBP1Q96EV8 351 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 ABHD17AQ96GS6 310 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 IFT27Q9BW83 186 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 FN3KQ9H479 309 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 ZNF552Q9H707 407 aaPredicted RBP19.18■□□□□ 0.66
VPS28-212ENST00000530836 MCCC2Q9HCC0 563 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 SERINC1Q9NRX5 453 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 FKBP14Q9NWM8 211 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 CHRNA9Q9UGM1 479 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 M0R129 80 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 SNPHO15079 494 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 HIST1H2ABP04908 130 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 FHL1Q13642 323 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 PLPPR5Q32ZL2 321 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 FAM69AQ5T7M9 428 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 DPY19L2P2Q6ZN68 376 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 HIST3H2AQ7L7L0 130 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 BEST3Q8N1M1 668 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 SVOPQ8N4V2 548 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 HIST1H2ACQ93077 130 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 ZBTB8AQ96BR9 441 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 KTI12Q96EK9 354 aaPredicted RBP19.18■□□□□ 0.66
VPS28-212ENST00000530836 C1GALT1C1Q96EU7 318 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 LRR1Q96L50 414 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 COPS4Q9BT78 406 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 PAK1IP1Q9NWT1 392 aaPredicted RBP19.18■□□□□ 0.66
VPS28-212ENST00000530836 HIF3AQ9Y2N7 669 aa19.18■□□□□ 0.66
VPS28-212ENST00000530836 SPIN1Q9Y657 262 aaPredicted RBP19.18■□□□□ 0.66
VPS28-212ENST00000530836 SMIM31A0A1B0GVY4 71 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 TMEM72A0PK05 275 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 IDH3BO43837 385 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 ENTPD6O75354 484 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 ASAH2BP0C7U1 165 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 PIPP12273 146 aaPredicted RBP19.17■□□□□ 0.66
VPS28-212ENST00000530836 PEPDP12955 493 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 TTKP33981 857 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 ALDH3B2P48448 385 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 MASP1P48740 699 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 MFSD13AQ14CX5 517 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.17■□□□□ 0.66
VPS28-212ENST00000530836 AGAP7PQ5VUJ5 663 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 ARHGAP11AQ6P4F7 1023 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 ARSKQ6UWY0 536 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 KCTD8Q6ZWB6 473 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 MAMDC2Q7Z304 686 aaPredicted RBP19.17■□□□□ 0.66
VPS28-212ENST00000530836 SPARTQ8N0X7 666 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 OR1J4Q8NGS1 313 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 RFKQ969G6 155 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 DDIT4LQ96D03 193 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 AGAP4Q96P64 663 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 UBL7Q96S82 380 aaPredicted RBP19.17■□□□□ 0.66
VPS28-212ENST00000530836 GPX7Q96SL4 187 aaPredicted RBP19.17■□□□□ 0.66
VPS28-212ENST00000530836 SMAD5Q99717 465 aaKnown RBP19.17■□□□□ 0.66
VPS28-212ENST00000530836 VDAC3Q9Y277 283 aa19.17■□□□□ 0.66
VPS28-212ENST00000530836 PIEZO2Q9H5I5 2752 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 B4DXG7 233 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 SFTPCP11686 197 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 JUNBP17275 347 aaPredicted RBP19.16■□□□□ 0.66
VPS28-212ENST00000530836 CCNA2P20248 432 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 MVKQ03426 396 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 SYT14P1Q58G82 188 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 ZNF468Q5VIY5 522 aaPredicted RBP19.16■□□□□ 0.66
VPS28-212ENST00000530836 C1orf140Q5VVS0 124 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 POMZP3Q6PJE2 187 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 THSD4Q6ZMP0 1018 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 AHSA2Q719I0 299 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 TAAR8Q969N4 342 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 TUBA1CQ9BQE3 449 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 CCDC90BQ9GZT6 254 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 TIMMDC1Q9NPL8 285 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 CMC2Q9NRP2 79 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 IL20RAQ9UHF4 553 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.16■□□□□ 0.663e-6■□□□□ 9.1
VPS28-212ENST00000530836 SLC6A5Q9Y345 797 aa19.16■□□□□ 0.66
VPS28-212ENST00000530836 IRGMA1A4Y4 181 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 PRODHO43272 600 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 CBR3O75828 277 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 AHSA1O95433 338 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 IFNGP01579 166 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 TSPAN19P0C672 248 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 NOS3P29474 1203 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 RPS5P46782 204 aaKnown RBP19.15■□□□□ 0.66
VPS28-212ENST00000530836 DSCR4P56555 118 aaPredicted RBP19.15■□□□□ 0.66
VPS28-212ENST00000530836 OC90Q02509 493 aaPredicted RBP19.15■□□□□ 0.66
VPS28-212ENST00000530836 FOXF1Q12946 379 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 TIGD3Q6B0B8 471 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 LRRC17Q8N6Y2 441 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 PSD4Q8NDX1 1056 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 GGHQ92820 318 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 UTP23Q9BRU9 249 aaKnown RBP19.15■□□□□ 0.66
VPS28-212ENST00000530836 POTEKPQ9BYX7 375 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 PROK2Q9HC23 129 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 FBXL2Q9UKC9 423 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 PCDHGB7Q9Y5F8 929 aa19.15■□□□□ 0.66
VPS28-212ENST00000530836 RIIAD1A6NNX1 92 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms