RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ST8SIA1Q92185 356 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 C12orf43Q96C57 262 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 CRELD1Q96HD1 420 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TMEM80Q96HE8 168 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 NAA50Q9GZZ1 169 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 CPNE5Q9HCH3 593 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 GALNT9Q9HCQ5 603 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 HINT3Q9NQE9 182 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 TEKT2Q9UIF3 430 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.86□□□□□ -0.35
CUX1-209ENST00000487284 KCNMB2Q9Y691 235 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 IRGMA1A4Y4 181 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TRIM64BA6NI03 449 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 B4DXG7 233 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 H3BMQ9 156 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TAF4O00268 1085 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 PPP1R3DO95685 299 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 PTHP01270 115 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 PEPDP12955 493 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 CXCR1P25024 350 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 PSMB9P28065 219 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 MSX1P28360 303 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 CCL11P51671 97 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 ANKDD1AQ495B1 522 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 KLHL22Q53GT1 634 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 ABHD17BQ5VST6 288 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 ARHGAP11AQ6P4F7 1023 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TMEM81Q6P7N7 255 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 LRRC69Q6ZNQ3 347 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 LINC00696Q6ZRV3 163 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 SLC16A12Q6ZSM3 486 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 CXXC5Q7LFL8 322 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 RAB2BQ8WUD1 216 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TMEM234Q8WY98 164 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 YIPF6Q96EC8 236 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 COG8Q96MW5 612 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TSC22D3Q99576 134 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 FUNDC2Q9BWH2 189 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 FGF20Q9NP95 211 aaPredicted RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 SDHAF3Q9NRP4 125 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 ANKRD10Q9NXR5 420 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TAS2R16Q9NYV7 291 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 STMN3Q9NZ72 180 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 KLRF1Q9NZS2 232 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 WARS2Q9UGM6 360 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 DIMT1Q9UNQ2 313 aaKnown RBP12.86□□□□□ -0.35
CUX1-209ENST00000487284 HIF3AQ9Y2N7 669 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 WIF1Q9Y5W5 379 aa12.86□□□□□ -0.35
CUX1-209ENST00000487284 TMED7-TICAM2A0A0A6YYA0 188 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ETV2O00321 342 aaPredicted RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 TP53I11O14683 189 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 F10P00742 488 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 TSPAN19P0C672 248 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ASAH2BP0C7U1 165 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 HTR3AP46098 478 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 MTNR1AP48039 350 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 CDH11P55287 796 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 RAB40BQ12829 278 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ZNF362Q5T0B9 420 aaPredicted RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 BICRALQ6AI39 1079 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ZNF367Q7RTV3 350 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ANKRD13BQ86YJ7 626 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 CPOQ8IVL8 374 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 GID4Q8IVV7 300 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 DND1Q8IYX4 353 aaKnown RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 OR52I1Q8NGK6 324 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ZCCHC14Q8WYQ9 949 aaKnown RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 LGALS12Q96DT0 336 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 KTI12Q96EK9 354 aaPredicted RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 RNFT2Q96EX2 444 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 MOGAT1Q96PD6 335 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 GPX7Q96SL4 187 aaPredicted RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 SECISBP2Q96T21 854 aaKnown RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 TAPBPLQ9BX59 468 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ZNF552Q9H707 407 aaPredicted RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 METTL7AQ9H8H3 244 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 CHRNA9Q9UGM1 479 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 ENPP5Q9UJA9 477 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 TMED7Q9Y3B3 224 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 HRH3Q9Y5N1 445 aa12.85□□□□□ -0.35
CUX1-209ENST00000487284 CHCHD2Q9Y6H1 151 aaPredicted RBP12.85□□□□□ -0.35
CUX1-209ENST00000487284 ZZEF1O43149 2961 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 RIIAD1A6NNX1 92 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 MCIDASD6RGH6 385 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 K7ENP7 123 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 M0R082 166 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 ARPC3O15145 178 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 NOL3O60936 208 aaKnown RBP12.84□□□□□ -0.35
CUX1-209ENST00000487284 NPIPB7O75200 414 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 WISP1O95388 367 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 RAB36O95755 333 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 PRKCAP17252 672 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 PCSK6P29122 969 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 HTR1FP30939 366 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 UQCRC1P31930 480 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 TGFBR2P37173 567 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 CASP3P42574 277 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 PRPS1P60891 318 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 LTBQ06643 244 aa12.84□□□□□ -0.35
CUX1-209ENST00000487284 SNTA1Q13424 505 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms