RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	NRIP2	Q9BQI9	281 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	SLC39A3	Q9BRY0	314 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	MCCC2	Q9HCC0	563 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	DAZ3	Q9NR90	486 aa	Known RBP	2.58	□□□□□ -2
PTCD3-209	ENST00000472044	MMP26	Q9NRE1	261 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	RPS6KB2	Q9UBS0	482 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	ADAM28	Q9UKQ2	775 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	STAP1	Q9ULZ2	295 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	ASF1A	Q9Y294	204 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	CDC42BPB	Q9Y5S2	1711 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	KANK1	Q14678	1352 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	PLEKHH1	Q9ULM0	1364 aa		2.58	□□□□□ -2
PTCD3-209	ENST00000472044	TCRBV9S1A1T	A0A576	114 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044		A6NIZ1	184 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	SNTN	A6NMZ2	147 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	HIP1	O00291	1037 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	RGS16	O15492	202 aa	Predicted RBP	2.57	□□□□□ -2
PTCD3-209	ENST00000472044	MED7	O43513	233 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	SURF6	O75683	361 aa	Known RBP	2.57	□□□□□ -2
PTCD3-209	ENST00000472044	CLDN9	O95484	217 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	IL1B	P01584	269 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	KRT6A	P02538	564 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	CXCR2	P25025	360 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	HMGB2	P26583	209 aa	Known RBP	2.57	□□□□□ -2
PTCD3-209	ENST00000472044	IL12A	P29459	219 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	RBMX	P38159	391 aa	Known RBP	2.57	□□□□□ -2
PTCD3-209	ENST00000472044	OPRD1	P41143	372 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	CAV2	P51636	162 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	DLX1	P56177	255 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	RAP1B	P61224	184 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	SELENOT	P62341	195 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	ARFRP1	Q13795	201 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	NSDHL	Q15738	373 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	KLHL38	Q2WGJ6	581 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	FILIP1L	Q4L180	1135 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	BCL7A	Q4VC05	210 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	PDZK1	Q5T2W1	519 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	TIGD3	Q6B0B8	471 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	OR52E8	Q6IFG1	317 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	PMF1	Q6P1K2	205 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	KDELC1	Q6UW63	502 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	HSDL2	Q6YN16	418 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	RFLNA	Q6ZTI6	216 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	EFL1	Q7Z2Z2	1120 aa	Known RBP	2.57	□□□□□ -2
PTCD3-209	ENST00000472044	CCDC65	Q8IXS2	484 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	FAM83F	Q8NEG4	500 aa	Predicted RBP	2.57	□□□□□ -2
PTCD3-209	ENST00000472044	OR52H1	Q8NGJ2	320 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	RNF138	Q8WVD3	245 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	ZNF606	Q8WXB4	792 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	UFD1	Q92890	307 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	CLCC1	Q96S66	551 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	KRTAP4-4	Q9BYR3	166 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	RBKS	Q9H477	322 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	NIPAL2	Q9H841	368 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	FN3KRP	Q9HA64	309 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	THUMPD1	Q9NXG2	353 aa	Known RBP	2.57	□□□□□ -2
PTCD3-209	ENST00000472044	CLEC4A	Q9UMR7	237 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	ARHGAP21	Q5T5U3	1957 aa		2.57	□□□□□ -2
PTCD3-209	ENST00000472044	SCN2A	Q99250	2005 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	IQANK1	A0A1B0GTG1	560 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044		A8MXQ7	604 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044		E9PBE3	544 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	HSD17B6	O14756	317 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	RIPK2	O43353	540 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	FCMR	O60667	390 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	NPIPB7	O75200	414 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	TSPAN12	O95859	305 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	ZNF853	P0CG23	659 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	NR2C1	P13056	603 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	ATP6V1B2	P21281	511 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	CCNE1	P24864	410 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	KRTAP5-9	P26371	169 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	CTRL	P40313	264 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	GLP1R	P43220	463 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	SSR1	P43307	286 aa	Known RBP	2.56	□□□□□ -2
PTCD3-209	ENST00000472044	MAGEA8	P43361	318 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	ARRB1	P49407	418 aa	Predicted RBP	2.56	□□□□□ -2
PTCD3-209	ENST00000472044	TGFBR3	Q03167	851 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	CKAP4	Q07065	602 aa	Known RBP	2.56	□□□□□ -2
PTCD3-209	ENST00000472044	DMRTC1	Q5HYR2	192 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	LCE3E	Q5T5B0	92 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	KRTAP5-4	Q6L8H1	288 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	TMIGD1	Q6UXZ0	262 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	RNF165	Q6ZSG1	346 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	PGAP1	Q75T13	922 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	DHDDS	Q86SQ9	333 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	DCAF4L2	Q8NA75	395 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	SUMF2	Q8NBJ7	301 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	OR6C4	Q8NGE1	309 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	FGF11	Q92914	225 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	MYDGF	Q969H8	173 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	C10orf35	Q96D05	121 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	CXorf40B	Q96DE9	158 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	NPY6R	Q99463	290 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	ZBTB18	Q99592	522 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	COPS8	Q99627	209 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	NRTN	Q99748	197 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	MRPL45	Q9BRJ2	306 aa	Known RBP	2.56	□□□□□ -2
PTCD3-209	ENST00000472044	NANOG	Q9H9S0	305 aa		2.56	□□□□□ -2
PTCD3-209	ENST00000472044	PLGRKT	Q9HBL7	147 aa		2.56	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms