RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CHST2Q9Y4C5 530 aa10.12□□□□□ -0.79
USP4-204ENST00000416417 ALPK2Q86TB3 2170 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 CDHR4A6H8M9 788 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 GPIP06744 558 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 NUDT7P0C024 238 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 ZNF16P17020 682 aaPredicted RBP10.11□□□□□ -0.79
USP4-204ENST00000416417 FKBP2P26885 142 aaKnown RBP10.11□□□□□ -0.79
USP4-204ENST00000416417 MPGP29372 298 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 SELENOPP49908 381 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 P2RY4P51582 365 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 SRSF2Q01130 221 aaKnown RBP10.11□□□□□ -0.79
USP4-204ENST00000416417 GNA13Q14344 377 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 MST1LQ2TV78 715 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 ATG16L1Q676U5 607 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 IL17RELQ6ZVW7 336 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 MAVSQ7Z434 540 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 SERPINA11Q86U17 422 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 PHC2Q8IXK0 858 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 LRRC34Q8IZ02 419 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 ARIH2OSQ8N7S6 290 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 OR9I1Q8NGQ6 314 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 FAM168AQ92567 244 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 TNFRSF13CQ96RJ3 184 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 P2RX2Q9UBL9 471 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 SEC14L4Q9UDX3 406 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 AMDHD2Q9Y303 409 aa10.11□□□□□ -0.79
USP4-204ENST00000416417 A0A096LPE4 126 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 IGHV1-18A0A0C4DH31 117 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 A0A1W2PPZ6 126 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 TMEM120BA0PK00 339 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 AQP7P3A6NL99 342 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 FAAHO00519 579 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 HDAC3O15379 428 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 UPK3AO75631 287 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 SLC22A3O75751 556 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 KRT33AO76009 404 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 ANP32DO95626 131 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 KRT75O95678 551 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 NCF2P19878 526 aaPredicted RBP10.1□□□□□ -0.79
USP4-204ENST00000416417 ANXA11P50995 505 aaKnown RBP10.1□□□□□ -0.79
USP4-204ENST00000416417 PRPS1P60891 318 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 DSTNP60981 165 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 CARTPTQ16568 116 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 CHRFAM7AQ494W8 412 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 LIN52Q52LA3 116 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 TMEM225Q6GV28 225 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 NIPAL3Q6P499 406 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 VHLLQ6RSH7 139 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 ANKS4BQ8N8V4 417 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 SPATA3Q8NHX4 192 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 C10orf105Q8TEF2 133 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 SLC38A5Q8WUX1 472 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 TMEM45BQ96B21 275 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 SLC25A36Q96CQ1 311 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 TMEM19Q96HH6 336 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 ALKBH3Q96Q83 286 aaPredicted RBP10.1□□□□□ -0.79
USP4-204ENST00000416417 OR52B2Q96RD2 323 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 RSPO3Q9BXY4 272 aaPredicted RBP10.1□□□□□ -0.79
USP4-204ENST00000416417 FKRPQ9H9S5 495 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 COL6A5A8TX70 2615 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 DSPPQ9NZW4 1301 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 ATRQ13535 2644 aa10.1□□□□□ -0.79
USP4-204ENST00000416417 ABCA1O95477 2261 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 H7C417 338 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 SNNO75324 88 aaPredicted RBP10.09□□□□□ -0.79
USP4-204ENST00000416417 SNUPNO95149 360 aaKnown RBP10.09□□□□□ -0.79
USP4-204ENST00000416417 TFPTP0C1Z6 253 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 IGHV4-31P0DP07 118 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 UQCRBP14927 111 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 CBLP22681 906 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 APOBEC3AP31941 199 aaPredicted RBP10.09□□□□□ -0.79
USP4-204ENST00000416417 TGFBR3Q03167 851 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 TBRG1Q3YBR2 411 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 PDCD4Q53EL6 469 aaKnown RBP10.09□□□□□ -0.79
USP4-204ENST00000416417 C1orf140Q5VVS0 124 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 WBP2NLQ6ICG8 309 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 ZNF544Q6NX49 715 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 KLHL24Q6TFL4 600 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 CREB3L2Q70SY1 520 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 SSX8Q7RTT4 187 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 EPHX4Q8IUS5 362 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 ZNF440Q8IYI8 595 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 C17orf78Q8N4C9 275 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 C1orf162Q8NEQ5 155 aaPredicted RBP10.09□□□□□ -0.79
USP4-204ENST00000416417 OR1K1Q8NGR3 316 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 MAL2Q969L2 176 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 C3orf49Q96BT1 292 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 SORCS2Q96PQ0 1159 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 KCNK17Q96T54 332 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 PRR14Q9BWN1 585 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 TAPBPLQ9BX59 468 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 TPT1P8Q9HAU6 139 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 THAP1Q9NVV9 213 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 MXRA5Q9NR99 2828 aa10.09□□□□□ -0.79
USP4-204ENST00000416417 RTTNQ86VV8 2226 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 ELOA3DA6NLF2 546 aaPredicted RBP10.08□□□□□ -0.8
USP4-204ENST00000416417 TRPC5OSA6NMA1 111 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 A8MVM7 634 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 WNT11O96014 354 aa10.08□□□□□ -0.8
USP4-204ENST00000416417 IL6P05231 212 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms