RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 H0YIG0 161 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 TOR1AO14656 332 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 GPR75O95800 540 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 C6orf47O95873 294 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 TMIGD3P0DMS9 266 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-202ENST00000409435 PSMB5P28074 263 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 CRHR1P34998 444 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 RNF144AP50876 292 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-202ENST00000409435 SLC35A1P78382 337 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 IGSF11Q5DX21 431 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 WIPI1Q5MNZ9 446 aaPredicted RBP6.78□□□□□ -1.32
SCN9A-202ENST00000409435 NLRC3Q7RTR2 1065 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 FAM122BQ7Z309 247 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 GDF7Q7Z4P5 450 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 PQLC3Q8N755 202 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 ACOT4Q8N9L9 421 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 PLPP5Q8NEB5 264 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 FBXO17Q96EF6 278 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 OR51V1Q9H2C8 321 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 OPA3Q9H6K4 179 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 DUSP22Q9NRW4 184 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 PTTG3PQ9NZH4 202 aa6.78□□□□□ -1.32
SCN9A-202ENST00000409435 DDX60LQ5H9U9 1706 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 A0A1B0GV50 99 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 A0A1W2PQ09 198 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 A0A1W2PS29 197 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 F5H5P2 479 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 CYB5BO43169 146 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 MT-ND1P03886 318 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PRKACGP22612 351 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TAS2R38P59533 333 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 GAB1Q13480 694 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TRAM1Q15629 374 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF584Q8IVC4 421 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 BRIX1Q8TDN6 353 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SLC46A1Q96NT5 459 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PITX2Q99697 317 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ABCG5Q9H222 651 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PAK1IP1Q9NWT1 392 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TNFRSF10DQ9UBN6 386 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 COL5A3P25940 1745 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ARPC5O15511 151 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 NKX2-8O15522 239 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SLC19A1P41440 591 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ZFP36L2P47974 494 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ST3GAL3Q11203 375 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ST3GAL4Q11206 333 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ELAVL1Q15717 326 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TBC1D28Q2M2D7 210 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 BCL7AQ4VC05 210 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 CARFQ8N187 725 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 BBS10Q8TAM1 723 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 GLYATL2Q8WU03 294 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 H1FXQ92522 213 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 MACROD1Q9BQ69 325 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 RALYQ9UKM9 306 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF346Q9UL40 294 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 COL4A5P29400 1685 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TRAV20A0A0B4J274 112 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SERTM1A2A2V5 107 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 OR6C76A6NM76 312 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 hCG_2039718K7EN88 272 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PRAF2O60831 178 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 CLEC3BP05452 202 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TIA1P31483 386 aaKnown RBP eCLIP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 THBS2P35442 1172 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PTGIRP43119 386 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 GABRA2P47869 451 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 UBE2KP61086 200 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SNTB2Q13425 540 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TRAM2Q15035 370 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SLC36A2Q495M3 483 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 C2CD4AQ8NCU7 369 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 HUS1BQ8NHY5 278 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TMEM80Q96HE8 168 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF583Q96ND8 569 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 MAPKAP1Q9BPZ7 522 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 STRA6Q9BX79 667 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 POLR2J3Q9H1A7 115 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SSU72Q9NP77 194 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SLC35A3Q9Y2D2 325 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SPO11Q9Y5K1 396 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 A0A0A6YYH2 397 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 LOC100130705A0A1B0GUX0 176 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ANKRD34BA5PLL1 514 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 A6NJ64 397 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 OR2T1O43869 369 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 EIF1BO60739 113 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 TFP02787 698 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ITGA5P08648 1049 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 CISD3P0C7P0 127 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 LIFP15018 202 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SLC17A1Q14916 467 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 LBHQ53QV2 105 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 WDR74Q6RFH5 385 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 SPACA3Q8IXA5 215 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 OR10G2Q8NGC3 310 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 WDR55Q9H6Y2 383 aaPredicted RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF286AQ9HBT8 521 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms