RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 H0YAE9 185 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 J3QKU1 62 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 ZIC3O60481 467 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 MITFO75030 526 aaPredicted RBP12.82□□□□□ -0.36
SKA1-202ENST00000398452 GLSO94925 669 aaPredicted RBP12.82□□□□□ -0.36
SKA1-202ENST00000398452 NTN1O95631 604 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 SNAP29O95721 258 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 SFTPCP11686 197 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 CHMP24386 653 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 GSSP48637 474 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 CRISP1P54107 249 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 PRPS1P60891 318 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 CSNK2A1P68400 391 aaPredicted RBP12.82□□□□□ -0.36
SKA1-202ENST00000398452 NPRL3Q12980 569 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 ZNF74Q16587 644 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 LINC00303Q3SY05 128 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 TMEM176BQ3YBM2 270 aaPredicted RBP12.82□□□□□ -0.36
SKA1-202ENST00000398452 KLHL17Q6TDP4 642 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 SLC43A2Q8N370 569 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 MEIOBQ8N635 442 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 APOL4Q9BPW4 351 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 OR11A1Q9GZK7 315 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 TIGARQ9NQ88 270 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 C20orf141Q9NUB4 165 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 ZNF229Q9UJW7 825 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 HRH3Q9Y5N1 445 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 GMPPBQ9Y5P6 360 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 CORINQ9Y5Q5 1042 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 AP4B1Q9Y6B7 739 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 HEATR5AQ86XA9 2040 aa12.82□□□□□ -0.36
SKA1-202ENST00000398452 IGKV1D-42A0A075B6H8 117 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 TRGV5A0A0B4J1U4 118 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 B4DXG7 233 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 B8ZZF3 427 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 SULT2B1O00204 365 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 BCKDKO14874 412 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 SOX14O95416 240 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 FAM87AP0C7U9 286 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 ACADSP16219 412 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 MAKP20794 623 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 SLC6A6P31641 620 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 RPL4P36578 427 aaKnown RBP12.81□□□□□ -0.36
SKA1-202ENST00000398452 CAPGP40121 348 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 CD97P48960 835 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 RPS6KA3P51812 740 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 OR2B6P58173 313 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 RPS3AP61247 264 aaKnown RBP12.81□□□□□ -0.36
SKA1-202ENST00000398452 OR7A5Q15622 319 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 SLC36A3Q495N2 470 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 ZBED5Q49AG3 693 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 ANKRD34AQ69YU3 496 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 KRT80Q6KB66 452 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 RPUSD3Q6P087 351 aaKnown RBP12.81□□□□□ -0.36
SKA1-202ENST00000398452 FAM180AQ6UWF9 173 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 CASP12Q6UXS9 341 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 CHMP1BQ7LBR1 199 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 MEX3DQ86XN8 651 aaKnown RBP12.81□□□□□ -0.36
SKA1-202ENST00000398452 DEPDC4Q8N2C3 294 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 CLDN22Q8N7P3 220 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 SETD9Q8NE22 299 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 OR51A7Q8NH64 312 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 MFSD8Q8NHS3 518 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 TAAR8Q969N4 342 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 KTI12Q96EK9 354 aaPredicted RBP12.81□□□□□ -0.36
SKA1-202ENST00000398452 KLHL15Q96M94 604 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 ZNF570Q96NI8 536 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 DEFB127Q9H1M4 99 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 ACKR4Q9NPB9 350 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 ZNF71Q9NQZ8 489 aaPredicted RBP12.81□□□□□ -0.36
SKA1-202ENST00000398452 IMPAD1Q9NX62 359 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 TMEFF2Q9UIK5 374 aaPredicted RBP12.81□□□□□ -0.36
SKA1-202ENST00000398452 CDH10Q9Y6N8 788 aa12.81□□□□□ -0.36
SKA1-202ENST00000398452 LOC100130705A0A1B0GUX0 176 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 BLOC1S5-TXNDC5H3BN57 136 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 SEC14L5O43304 696 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 NDUFB2O95178 105 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 ACTL6AO96019 429 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 SMSP52788 366 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 CDC42P60953 191 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 SLC35A1P78382 337 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 EGR4Q05215 589 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 PMS2P3Q13401 168 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 IL18R1Q13478 541 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 MED21Q13503 144 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 TMEM44Q2T9K0 475 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 SLC6A19Q695T7 634 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 SMARCD3Q6STE5 483 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 UBQLNLQ8IYU4 475 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 RBMXL3Q8N7X1 1067 aaKnown RBP12.8□□□□□ -0.36
SKA1-202ENST00000398452 TEX19Q8NA77 164 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 OR13C2Q8NGS9 318 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 OR5J2Q8NH18 312 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 ABTB1Q969K4 478 aaPredicted RBP12.8□□□□□ -0.36
SKA1-202ENST00000398452 RELTQ969Z4 430 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 PNPLA2Q96AD5 504 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 ZNF524Q96C55 264 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 PLEKHA8Q96JA3 519 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 SLC38A2Q96QD8 506 aa12.8□□□□□ -0.36
SKA1-202ENST00000398452 NAA11Q9BSU3 229 aaPredicted RBP12.8□□□□□ -0.36
SKA1-202ENST00000398452 IFT27Q9BW83 186 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms