RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PRR23D1E9PI22 279 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ETV2O00321 342 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ARPC3O15145 178 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 TNFSF15O95150 251 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 PRR23D2P0DMB1 279 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 GADD45AP24522 165 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 RPL4P36578 427 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 TGFBR1P36897 503 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 MLF1P58340 268 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 PRPS1P60891 318 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ERVK-25P63136 954 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 DNASE1L3Q13609 305 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 SPHARQ15513 63 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 SSX1Q16384 188 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 TMEM164Q5U3C3 297 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 C19orf48Q6RUI8 117 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 FAM122BQ7Z309 247 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 RPS19BP1Q86WX3 136 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 GALNT15Q8N3T1 639 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ESX1Q8N693 406 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 SDR9C7Q8NEX9 313 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 OR52E2Q8NGJ4 325 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ZPLD1Q8TCW7 415 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ST8SIA1Q92185 356 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 RELTQ969Z4 430 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 RASD2Q96D21 266 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 LRFN3Q9BTN0 628 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 MND1Q9BWT6 205 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 FKRPQ9H9S5 495 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 PPP4R1LQ9P1A2 415 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ZNF229Q9UJW7 825 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 VDAC3Q9Y277 283 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 MRPS18BQ9Y676 258 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ALPK2Q86TB3 2170 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 SHISA8B8ZZ34 492 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 IGHA1P01876 353 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 GYPBP06028 91 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 FTH1P19P0C7X4 201 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 ZNF3P17036 446 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 DLSTP36957 453 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 LIMK1P53667 647 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 VBP1P61758 197 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 NCS1P62166 190 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 RPS15P62841 145 aaKnown RBP12.48□□□□□ -0.41
PTPRF-202ENST00000372405 RPL18Q07020 188 aaKnown RBP12.48□□□□□ -0.41
PTPRF-202ENST00000372405 FOXF1Q12946 379 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 TSTQ16762 297 aaKnown RBP12.48□□□□□ -0.41
PTPRF-202ENST00000372405 OR2G6Q5TZ20 316 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 ZNF468Q5VIY5 522 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-202ENST00000372405 PRAMEF20Q5VT98 475 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 ATCAYQ86WG3 371 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 WDSUB1Q8N9V3 476 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 ZNF485Q8NCK3 441 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 NLGN4YQ8NFZ3 816 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-202ENST00000372405 OR51G2Q8NGK0 314 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 TMEM234Q8WY98 164 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 NTNG2Q96CW9 530 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 TEAD3Q99594 435 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 OR51V1Q9H2C8 321 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 PROK2Q9HC23 129 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 SH2D2AQ9NP31 389 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 P4HTMQ9NXG6 502 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 H2AFY2Q9P0M6 372 aaPredicted RBP12.48□□□□□ -0.41
PTPRF-202ENST00000372405 FBXL2Q9UKC9 423 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 CELSR3Q9NYQ7 3312 aa12.48□□□□□ -0.41
PTPRF-202ENST00000372405 RIF1Q5UIP0 2472 aaKnown RBP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 LOC101059948A0A1B0GTJ6 334 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 IRGMA1A4Y4 181 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 A8MVM7 634 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 EFNA2O43921 213 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 HPP00738 406 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 F13BP05160 661 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 NBL1P41271 181 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 SSR4P51571 173 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 KLHL12Q53G59 568 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 ALG10Q5BKT4 473 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 C1orf140Q5VVS0 124 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 OPN5Q6U736 354 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 NPEPL1Q8NDH3 523 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 OR2M3Q8NG83 312 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 OR9Q1Q8NGQ5 310 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 NDNFQ8TB73 568 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 POC1BQ8TC44 478 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 ZNRF4Q8WWF5 429 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 Q96M85 177 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 FRMD6Q96NE9 622 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 BCL7BQ9BQE9 202 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 COL25A1Q9BXS0 654 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 CPNE5Q9HCH3 593 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 TAS2R5Q9NYW4 299 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 PCDHGB6Q9Y5F9 930 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 ZFHX2Q9C0A1 2572 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 CNOT1A5YKK6 2376 aaKnown RBP12.47□□□□□ -0.41
PTPRF-202ENST00000372405 TMEM129A0AVI4 362 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 MYL12BO14950 172 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 AHCYL1O43865 530 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 SLC25A12O75746 678 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 IFNGP01579 166 aa12.47□□□□□ -0.41
PTPRF-202ENST00000372405 SCG5P05408 212 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 185.9 ms