RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 PTPRBP23467 1997 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 CDC14CA4D256 554 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TFECO14948 347 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 REM1O75628 298 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 HLA-DPB1P04440 258 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 CFL1P23528 166 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 LCN1P31025 176 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TGM4P49221 684 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 CDH11P55287 796 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 NRG3P56975 720 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 RNF4P78317 190 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 PLAURQ03405 335 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 QPRTQ15274 297 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 MZT2BQ6NZ67 158 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 PLEKHM3Q6ZWE6 761 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 CMIPQ8IY22 773 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 APCDD1LQ8NCL9 501 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TOR1AIP2Q8NFQ8 470 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 ENKURQ8TC29 256 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TM9SF4Q92544 642 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 DIO2Q92813 273 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TP53INP1Q96A56 240 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 KRCC1Q9NPI7 259 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 H2AFY2Q9P0M6 372 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 DCHS1Q96JQ0 3298 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 CPSF4LA6NMK7 179 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TO15178 435 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 AKAP8O43823 692 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TCN2P20062 427 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 MYL9P24844 172 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 SLC1A3P43003 542 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 PLCXD2Q0VAA5 305 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 FGFBP1Q14512 234 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 TRIQKQ629K1 86 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 KLHL36Q8N4N3 616 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 POGLUT1Q8NBL1 392 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 OR5L2Q8NGL0 311 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 ARSGQ96EG1 525 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 PRR14Q9BWN1 585 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 MMP28Q9H239 520 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 RNF121Q9H920 327 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 ADAM30Q9UKF2 790 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 GPR52Q9Y2T5 361 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 ASPMQ8IZT6 3477 aa12.03□□□□□ -0.48
SQSTM1-201ENST00000360718 LOC102723996A0A087X1L8 192 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 TRBV11-1A0A0K0K1C0 115 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 NPIPB9F8W1W9 429 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 SCDO00767 359 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 HMGN1P05114 100 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 LIMS3P0CW19 117 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 LIMS4P0CW20 117 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 FPR3P25089 353 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 SLC26A5P58743 744 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 RPS18P62269 152 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 LSM11P83369 360 aaKnown RBP eCLIP12.02□□□□□ -0.493e-6■□□□□ 9.5
SQSTM1-201ENST00000360718 FABP5Q01469 135 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ACSM1Q08AH1 577 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 C16orf47Q6ZP98 133 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 GRAMD2AQ8IUY3 354 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 PRR22Q8IZ63 422 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ESX1Q8N693 406 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ASCC1Q8N9N2 400 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 PSD4Q8NDX1 1056 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 OR8K3Q8NH51 312 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 NUBPLQ8TB37 319 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ACOT11Q8WXI4 607 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 C11orf54Q9H0W9 315 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 FLRT3Q9NZU0 649 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 PCDHGB7Q9Y5F8 929 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 PCSK5Q92824 1860 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 B4DXG7 233 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ZFAND5O76080 213 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 OR5F1O95221 314 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 APOL3O95236 402 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 YES1P07947 543 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 GALP22466 123 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 HLA-DMAP28067 261 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ATP6V1E1P36543 226 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 OMPP47874 163 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 RPS15P62841 145 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 HOXC5Q00444 222 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 CDK10Q15131 360 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 PLET1Q6UQ28 207 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ZNF550Q7Z398 422 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 OR8D4Q8NGM9 314 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 OR4C3Q8NH37 302 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 SLC7A6Q92536 515 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 FAM46AQ96IP4 442 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ADOQ96SZ5 270 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 TM9SF2Q99805 663 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ZNF559Q9BR84 538 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 ASB6Q9NWX5 421 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 IL20Q9NYY1 176 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 CNIH4Q9P003 139 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 COMMD3Q9UBI1 195 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 EXOGQ9Y2C4 368 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 SLC35A3Q9Y2D2 325 aa12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 YARS2Q9Y2Z4 477 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-201ENST00000360718 SERINC4A6NH21 518 aa12.01□□□□□ -0.49
SQSTM1-201ENST00000360718 SURF4O15260 269 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms