RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 HSBP1L1C9JCN9 74 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 CTDSP2O14595 271 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 DVL2O14641 736 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 IL1AP01583 271 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 RPS23P62266 143 aaKnown RBP17.8■□□□□ 0.44
UPF1-201ENST00000262803 KCNJ8Q15842 424 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 MTFR2Q6P444 385 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 BPHLQ86WA6 291 aaPredicted RBP17.8■□□□□ 0.44
UPF1-201ENST00000262803 PARP16Q8N5Y8 322 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 PHYHIPQ92561 330 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 SUSD5O60279 629 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 GYPBP06028 91 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 MSL3P1P0C860 447 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 SLC35E2P0CK97 266 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 FCGR2AP12318 317 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 BDKRB2P30411 391 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 PSMB10P40306 273 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 ECI1P42126 302 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 TSSK4Q6SA08 328 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 KCNIP2Q9NS61 270 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 NOSIPQ9Y314 301 aaKnown RBP17.8■□□□□ 0.44
UPF1-201ENST00000262803 OR6C6A6NF89 314 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 RGS11O94810 467 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 ISL2Q96A47 359 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 TWSG1Q9GZX9 223 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 R3HDMLQ9H3Y0 253 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 STARD5Q9NSY2 213 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 ENPP1P22413 925 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 NKPD1Q17RQ9 610 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 UBE2NLQ5JXB2 153 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 ELSPBP1Q96BH3 223 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 ST6GALNAC5Q9BVH7 336 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 OLAHQ9NV23 265 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 PTTG3PQ9NZH4 202 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 MEIOCA2RUB1 952 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 ZNF814B7Z6K7 855 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 HPGDSO60760 199 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 IFNA17P01571 189 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 TFP02787 698 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 SELEP16581 610 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 HTR5AP47898 357 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 DAPP51397 102 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 EXOSC7Q15024 291 aaKnown RBP17.79■□□□□ 0.44
UPF1-201ENST00000262803 CPEB3Q8NE35 698 aaKnown RBP17.79■□□□□ 0.44
UPF1-201ENST00000262803 OR2A12Q8NGT7 310 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 ATOH1Q92858 354 aaPredicted RBP17.79■□□□□ 0.44
UPF1-201ENST00000262803 ELMOD3Q96FG2 381 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 MYEF2Q9P2K5 600 aaKnown RBP17.79■□□□□ 0.44
UPF1-201ENST00000262803 C17orf112F2Z3M2 114 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 MED6O75586 246 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 DCNP07585 359 aaKnown RBP17.79■□□□□ 0.44
UPF1-201ENST00000262803 IMPA1P29218 277 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 FRMD1Q8N878 549 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 C4orf36Q96KX1 117 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 SLA2Q9H6Q3 261 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 RASD1Q9Y272 281 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 ARPC5O15511 151 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 CHRM4P08173 479 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 EPHA1P21709 976 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 FUNDC1Q8IVP5 155 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 ESX1Q8N693 406 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 L3MBTL4Q8NA19 623 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 COQ10AQ96MF6 247 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 KIR3DX1Q9H7L2 352 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 MDFIC2A0A1B0GVS7 189 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 CDC14CA4D256 554 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 IL20RBQ6UXL0 311 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 SERPINA12Q8IW75 414 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 IL17RDQ8NFM7 739 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 BTF3L4Q96K17 158 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 HAO2Q9NYQ3 351 aa17.79■□□□□ 0.44
UPF1-201ENST00000262803 TRAV27A0A087WT01 109 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 HMX2A2RU54 273 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 FAM155AB1AL88 458 aaPredicted RBP17.78■□□□□ 0.44
UPF1-201ENST00000262803 DPM1O60762 260 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 BEST4Q8NFU0 473 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 OR4F15Q8NGB8 312 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 ZNF576Q9H609 170 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 PADI1Q9ULC6 663 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 LRRC30A6NM36 301 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 F11P03951 625 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 PRKAR1BP31321 381 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 RFLNAQ6ZTI6 216 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 PGAP1Q75T13 922 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 PELI3Q8N2H9 469 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 MCRIP1C9JLW8 97 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 EIF4EP06730 217 aaKnown RBP17.78■□□□□ 0.44
UPF1-201ENST00000262803 EXOSC6Q5RKV6 272 aaKnown RBP17.78■□□□□ 0.44
UPF1-201ENST00000262803 COMTD1Q86VU5 262 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 SGK3Q96BR1 496 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 NUDT9Q9BW91 350 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 OR51J1Q9H342 316 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 TRBV4-1A0A0J9YWV2 114 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 A0A1W2PPV4 95 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 A6NIN4 97 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 HCRTR1O43613 425 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 DBHP09172 617 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 GABRR1P24046 479 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 CHATP28329 748 aa17.78■□□□□ 0.44
UPF1-201ENST00000262803 TVP23AA6NH52 213 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms