RNA–Protein interactions for RNA: ENST00000640931.1

RTTN-223, Transcript of rotatin, human

TSL 5

Gene RTTN, Length 2,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTTN-223	ENST00000640931	MYO1C	O00159	1063 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	RNMT	O43148	476 aa	Known RBP	9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	PIP4K2B	P78356	416 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	NUCB1	Q02818	461 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	SLC39A6	Q13433	755 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	NOLC1	Q14978	699 aa	Known RBP eCLIP	9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	ARMCX6	Q7L4S7	300 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	TXLNB	Q8N3L3	684 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	KIF18A	Q8NI77	898 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	SPTLC3	Q9NUV7	552 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	CWC15	Q9P013	229 aa	Known RBP	9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	LRRC37A3	O60309	1634 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	TPM3	P06753	285 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	PROSER3	Q2NL68	480 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	KLHL40	Q2TBA0	621 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	INTS3	Q68E01	1043 aa	Known RBP	9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	FAM184A	Q8NB25	1140 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	TBC1D32	Q96NH3	1257 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	RPS6KL1	Q9Y6S9	549 aa		9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	DDX49	Q9Y6V7	483 aa	Known RBP	9.43	□□□□□ -0.9
RTTN-223	ENST00000640931	ALS2	Q96Q42	1657 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	CSB-PGBD3	P0DP91	1061 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	PIP4K2A	P48426	406 aa	Predicted RBP	9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	EIF4A1	P60842	406 aa	Known RBP	9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	FLII	Q13045	1269 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	PPP2R5A	Q15172	486 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	TSGA10IP	Q3SY00	556 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	TTC31	Q49AM3	519 aa	Predicted RBP	9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	CHD1L	Q86WJ1	897 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	CEP89	Q96ST8	783 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	ERBB3	P21860	1342 aa		9.42	□□□□□ -0.9
RTTN-223	ENST00000640931	BTBD11	A6QL63	1104 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	HTATSF1	O43719	755 aa	Known RBP	9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	MAP2K2	P36507	400 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	GYS2	P54840	703 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	PLEKHO1	Q53GL0	409 aa	Predicted RBP	9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	IFFO2	Q5TF58	517 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	MCTP2	Q6DN12	878 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	CADPS2	Q86UW7	1296 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	ANKRD20A12P	Q8NF67	263 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	ERCC4	Q92889	916 aa	Predicted RBP	9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	CHPF2	Q9P2E5	772 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	SSUH2	Q9Y2M2	353 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	CEMIP	Q8WUJ3	1361 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	RABEP1	Q15276	862 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	AKAP4	Q5JQC9	854 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	HDGFL1	Q5TGJ6	251 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	CEP85	Q6P2H3	762 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	C10orf67	Q8IYJ2	551 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	TACO1	Q9BSH4	297 aa	Known RBP	9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	ATG3	Q9NT62	314 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	ANAPC4	Q9UJX5	808 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	SPATA31A3	Q5VYP0	1347 aa		9.41	□□□□□ -0.9
RTTN-223	ENST00000640931	MEGF6	O75095	1541 aa		9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	DDIT3	P35638	169 aa		9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	IRX1	P78414	480 aa	Predicted RBP	9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	C1QTNF12	Q5T7M4	302 aa		9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	JAKMIP3	Q5VZ66	844 aa		9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	SUDS3	Q9H7L9	328 aa	Predicted RBP	9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	ZNF446	Q9NWS9	450 aa		9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	ATP10D	Q9P241	1426 aa		9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	CLEC11A	Q9Y240	323 aa		9.4	□□□□□ -0.9
RTTN-223	ENST00000640931	TEF	Q10587	303 aa		9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	ZSCAN26	Q16670	478 aa		9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	UVSSA	Q2YD98	709 aa		9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	C1orf141	Q5JVX7	400 aa		9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	UPF1	Q92900	1129 aa	Known RBP eCLIP	9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	STK31	Q9BXU1	1019 aa		9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	SLAIN2	Q9P270	581 aa		9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	9.4	□□□□□ -0.91
RTTN-223	ENST00000640931	KIF1A	Q12756	1690 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	TNS3	Q68CZ2	1445 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	PTPRC	P08575	1304 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	NPHP3	Q7Z494	1330 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	RIOK3	O14730	519 aa	Known RBP	9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	NCBP1	Q09161	790 aa	Known RBP	9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	CCDC30	Q5VVM6	783 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	TSHZ3	Q63HK5	1081 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	SYT10	Q6XYQ8	523 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	FAM212A	Q96EL1	285 aa		9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	TEX13A	Q9BXU3	409 aa	Predicted RBP	9.39	□□□□□ -0.91
RTTN-223	ENST00000640931	PNMA6E	A0A0J9YXQ4	647 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	GABBR2	O75899	941 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	LHX8	Q68G74	356 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	POTEA	Q6S8J7	498 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	CLEC17A	Q6ZS10	378 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	MSL3	Q8N5Y2	521 aa	Known RBP	9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	ANKRD44	Q8N8A2	993 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	ARHGEF1	Q92888	912 aa	Known RBP	9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	PHRF1	Q9P1Y6	1649 aa	Known RBP	9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	ANKRD18B	A2A2Z9	1011 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	FAM177B	A6PVY3	158 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	CLCN6	P51797	869 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	SART3	Q15020	963 aa	Known RBP	9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	RAB3GAP1	Q15042	981 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	NFATC2IP	Q8NCF5	419 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	RBSN	Q9H1K0	784 aa		9.38	□□□□□ -0.91
RTTN-223	ENST00000640931	SMC3	Q9UQE7	1217 aa		9.38	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms