RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 NPR1P16066 1061 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 RETREG2Q8NC44 543 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 FAM193BQ96PV7 902 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-218ENST00000640036 DENND2AQ9ULE3 1009 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 GNAQP50148 359 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 NAP1L1P55209 391 aaKnown RBP5.84□□□□□ -1.47
SCN1A-218ENST00000640036 TXNRD1Q16881 649 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 IQSEC3Q9UPP2 1182 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-218ENST00000640036 PTPN23Q9H3S7 1636 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 PABPN1LA6NDY0 278 aaKnown RBP5.84□□□□□ -1.48
SCN1A-218ENST00000640036 EXOSC9Q06265 439 aaKnown RBP5.84□□□□□ -1.48
SCN1A-218ENST00000640036 RSPH3Q86UC2 560 aa5.84□□□□□ -1.48
SCN1A-218ENST00000640036 MICAL1Q8TDZ2 1067 aa5.84□□□□□ -1.48
SCN1A-218ENST00000640036 GOPCQ9HD26 462 aa5.84□□□□□ -1.48
SCN1A-218ENST00000640036 HACL1Q9UJ83 578 aa5.84□□□□□ -1.48
SCN1A-218ENST00000640036 PNMA2Q9UL42 364 aa5.84□□□□□ -1.48
SCN1A-218ENST00000640036 CNPY2Q9Y2B0 182 aa5.84□□□□□ -1.48
SCN1A-218ENST00000640036 ABCA8O94911 1581 aa5.84□□□□□ -1.48
SCN1A-218ENST00000640036 ZNF213O14771 459 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 ZNF157P51786 506 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-218ENST00000640036 AAMPQ13685 434 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 KRT32Q14532 448 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 ANKRD1Q15327 319 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 BRINP3Q76B58 766 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 SMARCC2Q8TAQ2 1214 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 PIK3C2GO75747 1445 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 BBOX1O75936 387 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 DEF6Q9H4E7 631 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 GTF3C3Q9Y5Q9 886 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 PDCP20941 246 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 PIP4K2AP48426 406 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-218ENST00000640036 CCDC73Q6ZRK6 1079 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 BICD2Q8TD16 824 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 BICD1Q96G01 975 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 C6orf50Q9HD87 102 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 RAB11FIP3O75154 756 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 ADRA2BP18089 450 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 AXDND1Q5T1B0 1012 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-218ENST00000640036 NSD2O96028 1365 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 TMPOP42166 694 aaKnown RBP5.83□□□□□ -1.48
SCN1A-218ENST00000640036 TTLL5Q6EMB2 1281 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 HINFPQ9BQA5 517 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 LRFN2Q9ULH4 789 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 GINS2Q9Y248 185 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 KIAA0232Q92628 1395 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 PPP2R1AP30153 589 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 RPS8P62241 208 aaKnown RBP5.83□□□□□ -1.48
SCN1A-218ENST00000640036 MASTLQ96GX5 879 aa5.83□□□□□ -1.48
SCN1A-218ENST00000640036 PPEF1O14829 653 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 PDE8AO60658 829 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 SMC2O95347 1197 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 MKRN3Q13064 507 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 OLFM4Q6UX06 510 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 SPATA32Q96LK8 384 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 RSPH6AQ9H0K4 717 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 HOMER2Q9NSB8 354 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 IFT57Q9NWB7 429 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 TTF2Q9UNY4 1162 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 PIK3R4Q99570 1358 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 THOC2Q8NI27 1593 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 VPS37CA5D8V6 355 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 DKC1O60832 514 aaKnown RBP eCLIP5.82□□□□□ -1.481e-7■■■■■ 34.3
SCN1A-218ENST00000640036 VPS72Q15906 364 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 TLR3O15455 904 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 GTF2IP78347 998 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 CETN1Q12798 172 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 DEFB132Q7Z7B7 95 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 CCDC24Q8N4L8 307 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 LRRC45Q96CN5 670 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 RTEL1Q9NZ71 1219 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 C21orf2O43822 256 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 NUCB2P80303 420 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 TTLL7Q6ZT98 887 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 KRT26Q7Z3Y9 468 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 APOBEC3FQ8IUX4 373 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 WDR63Q8IWG1 891 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 NACA2Q9H009 215 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 AZI2Q9H6S1 392 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 PRDM5Q9NQX1 630 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 ANGEL1Q9UNK9 670 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 ABCC1P33527 1531 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 EFCAB6Q5THR3 1501 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 CETN2P41208 172 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 DHX8Q14562 1220 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 MFSD14CQ5VZR4 134 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 USP37Q86T82 979 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 DNAJC10Q8IXB1 793 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 LUC7LQ9NQ29 371 aaKnown RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 ZBBXA8MT70 800 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 HCLS1P14317 486 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 HOXC9P31274 260 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 DNM2P50570 870 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 TCP10Q12799 353 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 PDILTQ8N807 584 aa5.82□□□□□ -1.48
SCN1A-218ENST00000640036 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-218ENST00000640036 CCDC194A0A1B0GVG4 234 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 KCTD2Q14681 263 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 RGS22Q8NE09 1264 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 ERMNQ8TAM6 284 aa5.81□□□□□ -1.48
SCN1A-218ENST00000640036 MCM9Q9NXL9 1143 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms