RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CFAP44Q96MT7 982 aa19.71■□□□□ 0.75
SYNE2-228ENST00000639659 PDIA6Q15084 440 aa19.7■□□□□ 0.74
SYNE2-228ENST00000639659 DDX46Q7L014 1031 aaKnown RBP19.7■□□□□ 0.74
SYNE2-228ENST00000639659 COPS6Q7L5N1 327 aa19.7■□□□□ 0.74
SYNE2-228ENST00000639659 XAGE3Q8WTP9 111 aa19.7■□□□□ 0.74
SYNE2-228ENST00000639659 TRMT112Q9UI30 125 aaKnown RBP19.7■□□□□ 0.74
SYNE2-228ENST00000639659 TAF1P21675 1872 aa19.69■□□□□ 0.74
SYNE2-228ENST00000639659 HSP90AB3PQ58FF7 597 aa19.68■□□□□ 0.74
SYNE2-228ENST00000639659 SLC10A5Q5PT55 438 aa19.68■□□□□ 0.74
SYNE2-228ENST00000639659 LRP10Q7Z4F1 713 aa19.68■□□□□ 0.74
SYNE2-228ENST00000639659 NLRP10Q86W26 655 aa19.68■□□□□ 0.74
SYNE2-228ENST00000639659 SP8Q8IXZ3 490 aa19.68■□□□□ 0.74
SYNE2-228ENST00000639659 TRPM4Q8TD43 1214 aa19.68■□□□□ 0.74
SYNE2-228ENST00000639659 VPS33BQ9H267 617 aa19.68■□□□□ 0.74
SYNE2-228ENST00000639659 SHTN1A0MZ66 631 aa19.67■□□□□ 0.74
SYNE2-228ENST00000639659 BBOX1O75936 387 aa19.67■□□□□ 0.74
SYNE2-228ENST00000639659 GRAPQ13588 217 aa19.67■□□□□ 0.74
SYNE2-228ENST00000639659 TNIP1Q15025 636 aa19.67■□□□□ 0.74
SYNE2-228ENST00000639659 NEUROD2Q15784 382 aa19.67■□□□□ 0.74
SYNE2-228ENST00000639659 GRAPLQ8TC17 118 aaPredicted RBP19.67■□□□□ 0.74
SYNE2-228ENST00000639659 RTFDC1Q9BY42 306 aaPredicted RBP19.67■□□□□ 0.74
SYNE2-228ENST00000639659 LAS1LQ9Y4W2 734 aaKnown RBP19.67■□□□□ 0.74
SYNE2-228ENST00000639659 KIAA2012Q0VF49 1180 aa19.66■□□□□ 0.74
SYNE2-228ENST00000639659 SAPCD2Q86UD0 394 aa19.66■□□□□ 0.74
SYNE2-228ENST00000639659 SH3TC1Q8TE82 1336 aa19.66■□□□□ 0.74
SYNE2-228ENST00000639659 KRT24Q2M2I5 525 aa19.65■□□□□ 0.74
SYNE2-228ENST00000639659 MAP2K2P36507 400 aa19.64■□□□□ 0.73
SYNE2-228ENST00000639659 HIRAP54198 1017 aaPredicted RBP19.64■□□□□ 0.73
SYNE2-228ENST00000639659 LMOD3Q0VAK6 560 aa19.64■□□□□ 0.73
SYNE2-228ENST00000639659 TCIRG1Q13488 830 aa19.64■□□□□ 0.73
SYNE2-228ENST00000639659 MICALL2Q8IY33 904 aa19.64■□□□□ 0.73
SYNE2-228ENST00000639659 CCDC146Q8IYE0 955 aa19.64■□□□□ 0.73
SYNE2-228ENST00000639659 CNOT7Q9UIV1 285 aaKnown RBP19.64■□□□□ 0.73
SYNE2-228ENST00000639659 ZBTB12Q9Y330 459 aaPredicted RBP19.64■□□□□ 0.73
SYNE2-228ENST00000639659 CDHR2Q9BYE9 1310 aa19.63■□□□□ 0.73
SYNE2-228ENST00000639659 YDJCA8MPS7 323 aa19.63■□□□□ 0.73
SYNE2-228ENST00000639659 H7C1D1 291 aa19.63■□□□□ 0.73
SYNE2-228ENST00000639659 RIMBP2O15034 1052 aa19.63■□□□□ 0.73
SYNE2-228ENST00000639659 USP48Q86UV5 1035 aa19.63■□□□□ 0.73
SYNE2-228ENST00000639659 DBNDD1Q9H9R9 158 aa19.63■□□□□ 0.73
SYNE2-228ENST00000639659 DUOX1Q9NRD9 1551 aa19.62■□□□□ 0.73
SYNE2-228ENST00000639659 TMPOP42166 694 aaKnown RBP19.62■□□□□ 0.73
SYNE2-228ENST00000639659 RTL5Q5HYW3 569 aaPredicted RBP19.62■□□□□ 0.73
SYNE2-228ENST00000639659 DLK2Q6UY11 383 aa19.62■□□□□ 0.73
SYNE2-228ENST00000639659 CDC37L1Q7L3B6 337 aa19.62■□□□□ 0.73
SYNE2-228ENST00000639659 CHPF2Q9P2E5 772 aa19.62■□□□□ 0.73
SYNE2-228ENST00000639659 NSFL1CQ9UNZ2 370 aaKnown RBP19.62■□□□□ 0.73
SYNE2-228ENST00000639659 CASP8AP2Q9UKL3 1982 aa19.62■□□□□ 0.73
SYNE2-228ENST00000639659 C6orf229H3BNL8 230 aa19.61■□□□□ 0.73
SYNE2-228ENST00000639659 MLLT1Q03111 559 aaPredicted RBP19.61■□□□□ 0.73
SYNE2-228ENST00000639659 TBC1D10BQ4KMP7 808 aaPredicted RBP19.61■□□□□ 0.73
SYNE2-228ENST00000639659 RBM26Q5T8P6 1007 aaKnown RBP19.61■□□□□ 0.73
SYNE2-228ENST00000639659 SAMD7Q7Z3H4 446 aa19.61■□□□□ 0.73
SYNE2-228ENST00000639659 DDX60Q8IY21 1712 aaKnown RBP19.61■□□□□ 0.73
SYNE2-228ENST00000639659 ATP5J2-PTCD1G3V325 749 aa19.6■□□□□ 0.73
SYNE2-228ENST00000639659 PSMD14O00487 310 aa19.6■□□□□ 0.73
SYNE2-228ENST00000639659 HUNKP57058 714 aa19.6■□□□□ 0.73
SYNE2-228ENST00000639659 WASHC4Q2M389 1173 aa19.6■□□□□ 0.73
SYNE2-228ENST00000639659 ZC3H15Q8WU90 426 aaKnown RBP19.6■□□□□ 0.73
SYNE2-228ENST00000639659 FAM89AQ96GI7 184 aa19.6■□□□□ 0.73
SYNE2-228ENST00000639659 MCOLN1Q9GZU1 580 aa19.6■□□□□ 0.73
SYNE2-228ENST00000639659 BABAM1Q9NWV8 329 aa19.6■□□□□ 0.73
SYNE2-228ENST00000639659 LRRC37AA6NMS7 1700 aa19.59■□□□□ 0.73
SYNE2-228ENST00000639659 CA12O43570 354 aa19.59■□□□□ 0.73
SYNE2-228ENST00000639659 BRPF1P55201 1214 aaPredicted RBP19.59■□□□□ 0.73
SYNE2-228ENST00000639659 DGKZQ13574 1117 aa19.59■□□□□ 0.73
SYNE2-228ENST00000639659 HDGFL1Q5TGJ6 251 aa19.59■□□□□ 0.73
SYNE2-228ENST00000639659 TMC4Q7Z404 712 aa19.59■□□□□ 0.73
SYNE2-228ENST00000639659 CELF1Q92879 486 aaKnown RBP19.59■□□□□ 0.73
SYNE2-228ENST00000639659 PGAP2Q9UHJ9 254 aa19.59■□□□□ 0.73
SYNE2-228ENST00000639659 DOK7Q18PE1 504 aa19.58■□□□□ 0.72
SYNE2-228ENST00000639659 KRT26Q7Z3Y9 468 aa19.58■□□□□ 0.72
SYNE2-228ENST00000639659 HHIPL1Q96JK4 782 aa19.58■□□□□ 0.72
SYNE2-228ENST00000639659 ZIC5Q96T25 663 aa19.58■□□□□ 0.72
SYNE2-228ENST00000639659 ADM5C9JUS6 153 aa19.56■□□□□ 0.72
SYNE2-228ENST00000639659 ECE2O60344 883 aa19.56■□□□□ 0.72
SYNE2-228ENST00000639659 EGFRP00533 1210 aa19.56■□□□□ 0.72
SYNE2-228ENST00000639659 GPSM2P81274 684 aa19.56■□□□□ 0.72
SYNE2-228ENST00000639659 NOGQ13253 232 aa19.56■□□□□ 0.72
SYNE2-228ENST00000639659 PLBD2Q8NHP8 589 aa19.56■□□□□ 0.72
SYNE2-228ENST00000639659 COL4A1P02462 1669 aa19.56■□□□□ 0.72
SYNE2-228ENST00000639659 G3V3G9 751 aa19.55■□□□□ 0.72
SYNE2-228ENST00000639659 DCAF8Q5TAQ9 597 aa19.55■□□□□ 0.72
SYNE2-228ENST00000639659 ANKRD13DQ6ZTN6 518 aa19.55■□□□□ 0.72
SYNE2-228ENST00000639659 DCPSQ96C86 337 aaKnown RBP19.55■□□□□ 0.72
SYNE2-228ENST00000639659 EYA3Q99504 573 aa19.55■□□□□ 0.72
SYNE2-228ENST00000639659 KCNQ5Q9NR82 932 aa19.55■□□□□ 0.72
SYNE2-228ENST00000639659 POLLQ9UGP5 575 aa19.55■□□□□ 0.72
SYNE2-228ENST00000639659 C2orf69Q8N8R5 385 aa19.54■□□□□ 0.72
SYNE2-228ENST00000639659 GBA2Q9HCG7 927 aaPredicted RBP19.54■□□□□ 0.72
SYNE2-228ENST00000639659 POLR2AP24928 1970 aaKnown RBP19.53■□□□□ 0.72
SYNE2-228ENST00000639659 CHL1O00533 1208 aa19.53■□□□□ 0.72
SYNE2-228ENST00000639659 IRS4O14654 1257 aaPredicted RBP19.53■□□□□ 0.72
SYNE2-228ENST00000639659 WDR43Q15061 677 aaKnown RBP eCLIP19.53■□□□□ 0.72
SYNE2-228ENST00000639659 RALBP1Q15311 655 aa19.53■□□□□ 0.72
SYNE2-228ENST00000639659 RGMBQ6NW40 437 aa19.53■□□□□ 0.72
SYNE2-228ENST00000639659 DPF2Q92785 391 aa19.53■□□□□ 0.72
SYNE2-228ENST00000639659 ISCA1Q9BUE6 129 aa19.53■□□□□ 0.72
SYNE2-228ENST00000639659 DBF4Q9UBU7 674 aaPredicted RBP19.53■□□□□ 0.72
SYNE2-228ENST00000639659 KIF4BQ2VIQ3 1234 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms